Package org.anchoranalysis.plugin.mpp.bean.define

Class Develop

Object

AnchorBean<Task<MultiInput,NoSharedState>>

Task<MultiInput,NoSharedState>

TaskWithoutSharedState<MultiInput>

Develop

public class Develop
extends TaskWithoutSharedState<MultiInput>

Derives various types of outputs (images, histograms etc.) from MultiInputs.

The following outputs are produced:

Output Name	Default?	Description
outputs produced by a DefineOutputter in define
	outputs produced by a OutputFeatureTable in featureTables
		outputs produced by a EnergyStackWriter
outputs from Task

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
Develop()

Method Summary

Modifier and Type	Method	Description
OutputEnabledMutable	defaultOutputs()	If specified, default rules for determine which outputs are enabled or not.
void	doJobOnInput(InputBound<MultiInput,NoSharedState> input)	Performs the task on a particular input.
DefineOutputter	getDefine()	Defines entities (chanels, stacks etc.) that are derived from inputs and other entities.
String	getDictionary()	If non-empty, the identifier for a dictionary that is treated as part of the energy-stack.
List<OutputFeatureTable>	getFeatureTables()	Specifies a feature-table that can also be outputted.
boolean	hasVeryQuickPerInputExecution()	Is the execution-time of the task per-input expected to be very quick to execute?
InputTypesExpected	inputTypesExpected()	Highest class(es) that will function as a valid input.
void	setDefine(DefineOutputter define)	Defines entities (chanels, stacks etc.) that are derived from inputs and other entities.
void	setDictionary(String dictionary)	If non-empty, the identifier for a dictionary that is treated as part of the energy-stack.
void	setFeatureTables(List<OutputFeatureTable> featureTables)	Specifies a feature-table that can also be outputted.

Methods inherited from class org.anchoranalysis.experiment.bean.task.TaskWithoutSharedState

afterAllJobsAreExecuted, beforeAnyJobIsExecuted

Methods inherited from class org.anchoranalysis.experiment.bean.task.Task

executeJob, isInputCompatibleWith

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Develop

public Develop()

Method Details

doJobOnInput

public void doJobOnInput(InputBound<MultiInput,NoSharedState> input)
                  throws JobExecutionException

Description copied from class: Task

Performs the task on a particular input.

Specified by:

doJobOnInput in class Task<MultiInput,NoSharedState>

Parameters:

input - the input for the job.

Throws:

JobExecutionException - if an error occurs executing a particular job, that is not otherwise suppressed.

hasVeryQuickPerInputExecution

public boolean hasVeryQuickPerInputExecution()

Description copied from class: Task

Is the execution-time of the task per-input expected to be very quick to execute?

Specified by:

hasVeryQuickPerInputExecution in class Task<MultiInput,NoSharedState>

Returns:

true iff the execution is expected to be very quick, false otherwise.

inputTypesExpected

public InputTypesExpected inputTypesExpected()

Description copied from class: Task

Highest class(es) that will function as a valid input.

This is usually the class of T (or sometimes the absolute base class InputFromManager).

Specified by:

inputTypesExpected in class Task<MultiInput,NoSharedState>

Returns:

the input-types that a task expects.

defaultOutputs

public OutputEnabledMutable defaultOutputs()

Description copied from class: Task

If specified, default rules for determine which outputs are enabled or not.

Overrides:

defaultOutputs in class Task<MultiInput,NoSharedState>

Returns:

the default rules if they exist.

getDefine

public DefineOutputter getDefine()

Defines entities (chanels, stacks etc.) that are derived from inputs and other entities.

setDefine

public void setDefine(DefineOutputter define)

Defines entities (chanels, stacks etc.) that are derived from inputs and other entities.

getFeatureTables

public List<OutputFeatureTable> getFeatureTables()

Specifies a feature-table that can also be outputted.

setFeatureTables

public void setFeatureTables(List<OutputFeatureTable> featureTables)

Specifies a feature-table that can also be outputted.

getDictionary

public String getDictionary()

If non-empty, the identifier for a dictionary that is treated as part of the energy-stack.

setDictionary

public void setDictionary(String dictionary)

If non-empty, the identifier for a dictionary that is treated as part of the energy-stack.