Package org.anchoranalysis.test.experiment.launcher

Class ExperimentLauncherFromShell

Object

ExperimentLauncherFromShell

public class ExperimentLauncherFromShell
extends Object

Launches an experiment by calling the application 'anchor' via the shell.

This is particularly useful for unit-tests that call experiments, but want to do it with all the libraries and plugins instantiated, as they would be from the shell.

Constructor Summary

Constructors

Constructor	Description
ExperimentLauncherFromShell(TestLoader loader)	Create with a specific loader.

Method Summary

Modifier and Type	Method	Description
void	runExperiment(String testPathToExperiment)	Runs an experiment identified by an XML found in the resources
void	runExperiment(String testPathToExperiment, Optional<String> testPathToInput, Optional<String> testPathToOutput)	Runs an experiment identified by an XML found in the resources
TestLoader	runExperimentInTemporaryDirectory(String testPathToExperiment, Path temporaryDirectory)	Creates a temporary-folder, copies data all data from the associated test-loader, and runs an experiment
TestLoader	runExperimentInTemporaryDirectory(String testPathToExperiment, Optional<String> testPathToInput, Optional<String> testPathToOutput, Path temporaryDirectory, String[] specificSubdirectories)	Creates a temporary-folder, copies data all data from the associated test-loader, and runs an experiment

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExperimentLauncherFromShell

public ExperimentLauncherFromShell(TestLoader loader)

Create with a specific loader.

Parameters:

loader - the loader, that loads resources for tests.

Method Details

runExperiment

public void runExperiment(String testPathToExperiment)

Runs an experiment identified by an XML found in the resources

Parameters:

testPathToExperiment - path to the resources where the experiment XML is found

runExperiment

public void runExperiment(String testPathToExperiment,
 Optional<String> testPathToInput,
 Optional<String> testPathToOutput)

Runs an experiment identified by an XML found in the resources

Parameters:

testPathToExperiment - path to the resources where the experiment XML is found

testPathToInput - if non-null, the path to a replacement input-manager. if null, ignored.

testPathToOutput - if non-null, the path to a replacement output-manager. if null, ignored.

runExperimentInTemporaryDirectory

public TestLoader runExperimentInTemporaryDirectory(String testPathToExperiment,
 Path temporaryDirectory)

Creates a temporary-folder, copies data all data from the associated test-loader, and runs an experiment

Parameters:

testPathToExperiment - path to the resources where the experiment XML is found

temporaryDirectory - the temporary folder to copy files to

Returns:

a test-loader bounded to the temporary folder

runExperimentInTemporaryDirectory

public TestLoader runExperimentInTemporaryDirectory(String testPathToExperiment,
 Optional<String> testPathToInput,
 Optional<String> testPathToOutput,
 Path temporaryDirectory,
 String[] specificSubdirectories)

Creates a temporary-folder, copies data all data from the associated test-loader, and runs an experiment

Parameters:

testPathToExperiment - path to the resources where the experiment XML is found

testPathToInput - if defined, the path to a replacement input-manager. if empty(), ignored.

testPathToOutput - if defined, the path to a replacement output-manager. if empty(), ignored.

temporaryDirectory - the temporary folder to copy files to

specificSubdirectories - if non-null, specific subdirectories to copy. if null, ignored.

Returns:

a test-loader bounded to the temporary folder