Package | Description |
---|---|
org.anchoranalysis.annotation |
Ground truth for an image in diverse forms.
|
org.anchoranalysis.annotation.image |
Annotations that apply to an image as a whole.
|
org.anchoranalysis.annotation.io |
Reading and writing annotations to the filesystem.
|
org.anchoranalysis.annotation.io.assignment |
A pairing of objects from two collections (bipartite matching).
|
org.anchoranalysis.annotation.io.assignment.generator |
Generates output images to illustrate a
Assignment between annotations. |
org.anchoranalysis.annotation.io.bean |
Beans related to reading / writing / specifying annotations.
|
org.anchoranalysis.annotation.io.bean.comparer |
What to compare an annotation (ground truth) against?
|
org.anchoranalysis.annotation.io.comparer |
Non-bean classes involving comparing results and annotations.
|
org.anchoranalysis.annotation.io.image |
Reading and writing whole-image label annotations.
|
org.anchoranalysis.annotation.io.image.findable |
The outcome of searching for annotations or images on the file-system.
|
org.anchoranalysis.annotation.io.mark |
Reading and writing
Mark -related annotations from/to the
file-system. |
org.anchoranalysis.annotation.mark |
Annotations that use one or more marks to describe entities in an image.
|
org.anchoranalysis.bean |
Defining, loading, initializing Anchor Beans.
|
org.anchoranalysis.bean.annotation |
Annotations that decorate fields in an Anchor Bean.
|
org.anchoranalysis.bean.define |
Define and related-classes. |
org.anchoranalysis.bean.define.adder |
DefineAdder and related-classes. |
org.anchoranalysis.bean.exception |
Exceptions that can occur executing generic operations on Anchor Beans.
|
org.anchoranalysis.bean.initializable |
Initializing beans with particular parameters, including recursively.
|
org.anchoranalysis.bean.initializable.parameters |
Some parameterization used when initializing beans.
|
org.anchoranalysis.bean.initializable.property |
Initializating a bean with parameters.
|
org.anchoranalysis.bean.permute |
Applying permutations to a bean's fields.
|
org.anchoranalysis.bean.permute.assign |
Imposes a permutation value on one or more properties of a bean.
|
org.anchoranalysis.bean.permute.property |
Applying permutations to the properties of a bean.
|
org.anchoranalysis.bean.primitive |
Beans that implement collections of primitive element types, as well as
String . |
org.anchoranalysis.bean.shared |
Utility beans which have a generally broader use than a specific module.
|
org.anchoranalysis.bean.shared.color |
Beans that specify colors.
|
org.anchoranalysis.bean.shared.color.scheme |
Beans that create lists or indices of colors according to particular schemes.
|
org.anchoranalysis.bean.shared.dictionary |
Setting, referencing and initializing key-value parameters.
|
org.anchoranalysis.bean.shared.path |
Defines a root path directory on the filesystem whre files are read / written.
|
org.anchoranalysis.bean.shared.random |
Specifies a particular type of random-number generator.
|
org.anchoranalysis.bean.shared.regex |
Specifies regular-expressions.
|
org.anchoranalysis.bean.shared.relation |
Specifies a binary relation of some kind between scalars.
|
org.anchoranalysis.bean.shared.relation.threshold |
Specifies a unary relation to a threshold value.
|
org.anchoranalysis.bean.xml |
Reading Beans from XML files.
|
org.anchoranalysis.bean.xml.creator |
Creates beans from XML.
|
org.anchoranalysis.bean.xml.exception |
Exceptions that can thrown when loading beans from XML.
|
org.anchoranalysis.bean.xml.factory |
Custom factories for loading beans in custom ways from XML.
|
org.anchoranalysis.bean.xml.factory.primitive |
Factories to create beans in
org.anchoranalysis.bean.primitive . |
org.anchoranalysis.core.cache |
Caching (memozing) calls to a method so an operation does not need to be repeated.
|
org.anchoranalysis.core.collection |
Collection-related classes with general applicability that don't belong elsewhere.
|
org.anchoranalysis.core.color |
Specifying particular colors and groups of colors.
|
org.anchoranalysis.core.exception |
Very general exceptions and base classes for exceptions with wide applicability.
|
org.anchoranalysis.core.exception.combinable |
Nested exceptions of similar type that can be combined together in a summary.
|
org.anchoranalysis.core.exception.friendly |
Particular types of exceptions that are guaranteed to have a text/form that gives user-friendly
error descriptions.
|
org.anchoranalysis.core.format |
File formats and associated extensions.
|
org.anchoranalysis.core.functional |
Utilities and interfaces for applying functional-programming.
|
org.anchoranalysis.core.functional.checked |
Versions of many functional-interfaces in
java.util.function that throw
checked-exceptions. |
org.anchoranalysis.core.functional.unchecked |
Adds additional functional-interfaces, that are unavailable in
java.util.function , and do
not throw checked exceptions. |
org.anchoranalysis.core.graph |
Data-structures for directed and undirected graphs, with or without an edge payload.
|
org.anchoranalysis.core.identifier.getter |
Data structures for adding a unique name (a String or integer identifier) to other entities.
|
org.anchoranalysis.core.identifier.name |
Data structures for name (String) and value associations.
|
org.anchoranalysis.core.identifier.provider |
A collection of named-elements, a
NamedProvider and related operations. |
org.anchoranalysis.core.identifier.provider.store |
Data structures like
NamedProvider with
supporting for adding new elements. |
org.anchoranalysis.core.index |
Classes to support getting / setting / specifying unique-integers (indices) for elements.
|
org.anchoranalysis.core.index.range |
A range of indices from minimum to maximum.
|
org.anchoranalysis.core.log |
Interfaces to log messages, both information and error messages.
|
org.anchoranalysis.core.log.error |
Mechanism for reporting errors (exceptions/throwables) to the user.
|
org.anchoranalysis.core.random |
Generating random numbers.
|
org.anchoranalysis.core.serialize |
Utilities for serializing and deserializing objects.
|
org.anchoranalysis.core.system |
Utilities for interacting with the operating system or computer system generally
|
org.anchoranalysis.core.system.path |
Utilities for converting/manipulating file-paths.
|
org.anchoranalysis.core.time |
Recording the execution-time of operations for profiling.
|
org.anchoranalysis.core.value |
Encapsulating values or sets of named-values.
|
org.anchoranalysis.experiment |
Classes related to executing an experiment by calling jobs on inputs.
|
org.anchoranalysis.experiment.arguments |
Arguments that can further specify an experiment in addition to its bean specification.
|
org.anchoranalysis.experiment.bean |
Beans related to executing an experiment by calling jobs on inputs.
|
org.anchoranalysis.experiment.bean.identifier |
Assigning unique names to experiments.
|
org.anchoranalysis.experiment.bean.io |
Generic experiments that handle input and output in structured ways.
|
org.anchoranalysis.experiment.bean.log |
Different approaches to where messages on the progress/status of an experiment are logged to.
|
org.anchoranalysis.experiment.bean.processor |
How a task is executed on multiple inputs.
|
org.anchoranalysis.experiment.bean.require |
A test whether certain conditions on arguments to experiments are fulfilled.
|
org.anchoranalysis.experiment.bean.task |
Defines a task,
which is a set of operations run on an input, that may or may not generate an output.
|
org.anchoranalysis.experiment.io |
Interfaces for replacing attributes of an experiment: input, output, task etc.
|
org.anchoranalysis.experiment.log |
Helpful classes for logging.
|
org.anchoranalysis.experiment.task |
Non-bean classes related to a
Task . |
org.anchoranalysis.experiment.task.processor |
Non-bean classes related to
JobProcessor . |
org.anchoranalysis.experiment.time |
How long particular operations take to execute.
|
org.anchoranalysis.feature.bean |
Beans pertaining to feature-calculation.
|
org.anchoranalysis.feature.bean.list |
A feature-list (custom list type for features) and associated providers.
|
org.anchoranalysis.feature.bean.operator |
Features that are sufficiently generic to work on any input-type.
|
org.anchoranalysis.feature.bean.provider |
Provider of a single feature.
|
org.anchoranalysis.feature.bean.results |
Defines base class
FeatureResults together with
some implementations. |
org.anchoranalysis.feature.calculate |
Sub-feature units of calculation that can be cached.
|
org.anchoranalysis.feature.calculate.bound |
Interfaces like
FeatureCalculator but bound to
particular features. |
org.anchoranalysis.feature.calculate.cache |
Classes to cache feature-results or parts of feature-results that occur repeatedly among features
or across calculations of the same feature.
|
org.anchoranalysis.feature.calculate.cache.part |
Equivalent classes to
org.anchoranalysis.feature.calculate.part after having been
resolved against a cache. |
org.anchoranalysis.feature.calculate.part |
A sub-part of the calculation of a feature, that can be cached, and reused by other features.
|
org.anchoranalysis.feature.energy |
A particular stack used in feature-calculations called a
EnergyStack together with related classes. |
org.anchoranalysis.feature.initialization |
Initialization parameters used for beans in
org.anchoranalysis.feature.bean . |
org.anchoranalysis.feature.input |
Base classes providing inputs to feature calculations.
|
org.anchoranalysis.feature.io.csv |
Metadata for writing feature calculation-results in CSV format.
|
org.anchoranalysis.feature.io.csv.metadata |
Writing the results of feature calculations to the file-system.
|
org.anchoranalysis.feature.io.csv.results |
Writing the results from feature-calculation to a CSV file.
|
org.anchoranalysis.feature.io.csv.table |
A
Generator for writing a table of feature values as a
CSV. |
org.anchoranalysis.feature.io.name |
Naming items in a weay that breaks down into multiple elements.
|
org.anchoranalysis.feature.io.results |
Writes feature-calculation results in different formats, also grouped results.
|
org.anchoranalysis.feature.io.results.group |
Various different outputs that can be written for the a grouped version of the results in
LabelledResultsCollector . |
org.anchoranalysis.feature.name |
Data objects for the names of features.
|
org.anchoranalysis.feature.results |
Results from one or more feature calculations.
|
org.anchoranalysis.feature.session |
A defined context in which one or more features are provided inputs and produce results.
|
org.anchoranalysis.feature.session.cache |
Creates a
FeatureCalculationCache to use
during feature-calculations. |
org.anchoranalysis.feature.session.cache.finder |
Strategies to determine which child-cache (among hierarchy) to employ for a particular feature
calculation.
|
org.anchoranalysis.feature.session.calculator |
Base classes for methods to calculate results from features.
|
org.anchoranalysis.feature.session.replace |
Strategies on whether to reuse or invalidate a feature-input's cache.
|
org.anchoranalysis.feature.shared |
Features shared for referencing among calculations.
|
org.anchoranalysis.feature.store |
A collection of named-
Feature s. |
org.anchoranalysis.image.bean |
Core (bean) classes for image processing.
|
org.anchoranalysis.image.bean.channel |
Base classes for performing operations on
Channel s. |
org.anchoranalysis.image.bean.displayer | |
org.anchoranalysis.image.bean.interpolator |
Beans for specifying image interpolators.
|
org.anchoranalysis.image.bean.nonbean |
Classes that are used elsewhere in this package but which aren't themselves AnchorBeans.
|
org.anchoranalysis.image.bean.nonbean.init |
Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
|
org.anchoranalysis.image.bean.nonbean.segment |
Non-bean classes relating to image-segmentation.
|
org.anchoranalysis.image.bean.nonbean.spatial.align |
Non-bean classes to help specify the position of one entity relative to the others.
|
org.anchoranalysis.image.bean.nonbean.spatial.arrange |
Non-beans to specify how to form a single-image by spatially combining other images.
|
org.anchoranalysis.image.bean.object |
Beans pertaining to
ObjectMask and their
collections. |
org.anchoranalysis.image.bean.provider |
Base classes for providers of different core data entities related to images.
|
org.anchoranalysis.image.bean.provider.stack |
A provider of
Stack s. |
org.anchoranalysis.image.bean.segment |
Base classes to perform image segmentation, transforming an image into another meaningful entity
or entities.
|
org.anchoranalysis.image.bean.segment.binary |
Base classes to perform binary-segmentation.
|
org.anchoranalysis.image.bean.segment.object |
Base classes to segment a channel into objects.
|
org.anchoranalysis.image.bean.spatial |
Beans to define entities or operate that consider Euclidian space.
|
org.anchoranalysis.image.bean.spatial.arrange |
Beans to specify how to form a single-image by spatially combining other images.
|
org.anchoranalysis.image.bean.spatial.arrange.align |
Aligning a
BoundingBox to fit inside another BoundingBox . |
org.anchoranalysis.image.bean.spatial.arrange.fill |
Montages images together to completely fill the available space, while preserving aspect ratio.
|
org.anchoranalysis.image.bean.spatial.arrange.overlay |
Combining other images through overlaying.
|
org.anchoranalysis.image.bean.spatial.arrange.tile |
Combining other images through tiling.
|
org.anchoranalysis.image.bean.spatial.direction |
Beans to specify a direction.
|
org.anchoranalysis.image.bean.threshold |
Base classes for thresholding and calculating levels for thresholding.
|
org.anchoranalysis.image.bean.threshold.relation |
Reusable relations to a threshold.
|
org.anchoranalysis.image.bean.unitvalue.distance |
Converting quantities of distance between units.
|
org.anchoranalysis.image.bean.unitvalue.extent |
Converting quantities of extent (area or volume) between units.
|
org.anchoranalysis.image.bean.unitvalue.extent.area |
Converting quantities of area between units.
|
org.anchoranalysis.image.bean.unitvalue.extent.volume |
Converting quantities of volume between units.
|
org.anchoranalysis.image.core.bufferedimage |
Conversions and operations involving Java AWT's
BufferedImage . |
org.anchoranalysis.image.core.channel |
The
Channel core data-class and related operations
and converters. |
org.anchoranalysis.image.core.channel.convert |
Converts a channel to other data-types.
|
org.anchoranalysis.image.core.channel.convert.attached |
Converts a channel to another data-type based upon another object to which it is attached.
|
org.anchoranalysis.image.core.channel.convert.attached.channel |
Converts a channel to another data-type based upon a
Channel to which it is attached. |
org.anchoranalysis.image.core.channel.convert.attached.histogram |
Converts a channel to another data-type based upon a
Histogram to which it is attached. |
org.anchoranalysis.image.core.channel.factory |
Factory classes for creating
Channel for various
voxel data-types. |
org.anchoranalysis.image.core.contour |
Finds outline voxels, the pixels on the contour/edge of the object.
|
org.anchoranalysis.image.core.dimensions |
Classes to describe the size of images or components of images both in voxels and physically.
|
org.anchoranalysis.image.core.dimensions.size.suggestion |
Suggestions on a size for an image.
|
org.anchoranalysis.image.core.mask |
An image with only two permissible states.
|
org.anchoranalysis.image.core.mask.combine |
Binary operations involving voxelwise combination of
Mask . |
org.anchoranalysis.image.core.merge |
Merges two or more entities.
|
org.anchoranalysis.image.core.object |
The key data entity
org.anchoranalysis.image.voxel.object and related-classes and
operations. |
org.anchoranalysis.image.core.object.label |
Labelling elements (object-masks or similar) with unique successive integers in a channel.
|
org.anchoranalysis.image.core.object.properties |
An
ObjectCollection with associated key-value
pairs. |
org.anchoranalysis.image.core.object.scale |
Scaling object-collections, or lists of elements with object-representations.
|
org.anchoranalysis.image.core.object.scale.method |
Scaling elements with an associated
ObjectMask
either collectively or independently. |
org.anchoranalysis.image.core.points |
Operations that extract points from image data entities or vice versa.
|
org.anchoranalysis.image.core.stack |
Defines the key data object,
Stack , and related
classes. |
org.anchoranalysis.image.core.stack.named |
A collection of
Stack s, each with a unique identifier
as a name. |
org.anchoranalysis.image.feature.bean |
Beans pertaining to feature definition and calculation.
|
org.anchoranalysis.image.feature.bean.evaluator |
Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
|
org.anchoranalysis.image.feature.bean.histogram |
Features that operate on a
Histogram . |
org.anchoranalysis.image.feature.bean.object.collection |
Features that operate on a
ObjectCollection . |
org.anchoranalysis.image.feature.bean.object.pair |
Features that operate on a pair of
ObjectMask s. |
org.anchoranalysis.image.feature.bean.object.single |
Features that operate on a single
ObjectMask . |
org.anchoranalysis.image.feature.bean.physical |
Features that convert to/from physical spatial units (e.g.
|
org.anchoranalysis.image.feature.calculation |
Reusable implementations of
CalculationPart
related to images. |
org.anchoranalysis.image.feature.calculator |
Implementations of
FeatureCalculatorMulti
related to images, especially to create tables of feature-calculations. |
org.anchoranalysis.image.feature.calculator.merged |
A particular implementation of
FeatureCalculatorMulti for feature-calculations based
upon pairs of image-objects. |
org.anchoranalysis.image.feature.input |
Image-related implementations of
FeatureInput . |
org.anchoranalysis.image.inference |
Inference of machine learning models on images.
|
org.anchoranalysis.image.inference.bean.reduce |
Beans to reduce the number of results that are returned from inference, by removing overlaping
entities etc.
|
org.anchoranalysis.image.inference.bean.segment.instance |
Instance-segmentation of a
Stack . |
org.anchoranalysis.image.inference.bean.segment.reduce |
Non-bean classes to reduce the number of results that are returned from inference, by removing
overlapping entities etc.
|
org.anchoranalysis.image.inference.segment |
Non-beans pertaining to segmentation of images via model inference.
|
org.anchoranalysis.image.io |
Reading and writing of image-related data objects to and from the filesystem.
|
org.anchoranalysis.image.io.bean.channel |
Beans pertaining to reading
Channel s as input. |
org.anchoranalysis.image.io.bean.object.draw |
How to represent an object-mask in a raster that is being drawn.
|
org.anchoranalysis.image.io.bean.object.feature |
Beans to specify the outputting of features into CSV from a
ObjectCollection . |
org.anchoranalysis.image.io.bean.stack.combine |
Beans to combine multiple stacks into a single stack before outputting.
|
org.anchoranalysis.image.io.bean.stack.metadata.reader |
Bean classes for reading
ImageMetadata from the
file-system. |
org.anchoranalysis.image.io.bean.stack.reader |
Bean classes for reading raster-files from the filesystem.
|
org.anchoranalysis.image.io.bean.stack.writer |
Bean classes for writing raster-files to the filesystem.
|
org.anchoranalysis.image.io.channel.input |
Non-bean classes for reading a
Channel from the
filesystem. |
org.anchoranalysis.image.io.channel.map |
Non-bean classes for a mapping of names to
Channel s. |
org.anchoranalysis.image.io.channel.output |
Non-bean classes for writing a
Channel to the
filesystem. |
org.anchoranalysis.image.io.histogram.input |
Non-bean classes for reading a
Histogram from the
filesystem. |
org.anchoranalysis.image.io.histogram.output |
Non-bean classes for writing a
Histogram to the
filesystem. |
org.anchoranalysis.image.io.object |
Non-bean classes for reading / writing an
ObjectCollection from and to the filesystem. |
org.anchoranalysis.image.io.object.input |
Non-bean classes for reading an
ObjectCollection
from the filesystem. |
org.anchoranalysis.image.io.object.output.grayscale |
Writing an
ObjectCollection to the filesystem as a
single-channeled stack. |
org.anchoranalysis.image.io.object.output.hdf5 |
Writing an
ObjectCollection to the filesystem in
HDF5 format. |
org.anchoranalysis.image.io.object.output.mask |
Writing an
ObjectCollection to the filesystem as
multiple binary singled-channeled images. |
org.anchoranalysis.image.io.object.output.rgb |
Writing an
ObjectCollection to the filesystem as
RGB raster-images. |
org.anchoranalysis.image.io.stack |
Non-bean classes for reading / writing a
Stack from
and to the filesystem. |
org.anchoranalysis.image.io.stack.input |
Non-bean classes for reading a
Stack from the
filesystem. |
org.anchoranalysis.image.io.stack.output |
Non-bean classes for writing a
Stack to the
filesystem. |
org.anchoranalysis.image.io.stack.output.box |
Base classes for generators that ultimately write only a bounding-box portion of a
Stack to the filesystem. |
org.anchoranalysis.image.io.stack.output.generator |
Base classes for generators that ultimately write a
Stack to the filesystem. |
org.anchoranalysis.image.io.stack.time |
A time-sequence of
Stack s. |
org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
org.anchoranalysis.image.voxel.arithmetic |
Arithmetic operations for
Voxels . |
org.anchoranalysis.image.voxel.assigner |
Assigns values to some or all voxels.
|
org.anchoranalysis.image.voxel.binary |
The
BinaryVoxels class and related operations. |
org.anchoranalysis.image.voxel.binary.connected | |
org.anchoranalysis.image.voxel.binary.values |
Defining on and off intensity-values to interpret an image in a binary way.
|
org.anchoranalysis.image.voxel.buffer |
A buffer of voxel-values, usually corresponding to a single z-slice in
Voxels . |
org.anchoranalysis.image.voxel.buffer.primitive |
Conversion of both primitive data types and image structures between Anchor's data-structures and
other representations.
|
org.anchoranalysis.image.voxel.buffer.slice |
A container with voxel-buffers for each z-slice.
|
org.anchoranalysis.image.voxel.convert |
Converting
Voxels to different data-types. |
org.anchoranalysis.image.voxel.convert.bufferedimage |
Converts anchor data-structures to the
BufferedImage used by Java's AWT. |
org.anchoranalysis.image.voxel.convert.imglib2 |
Converts anchor data-structures to those used by ImgLib2.
|
org.anchoranalysis.image.voxel.datatype |
The different data-types that can be used to represent voxels.
|
org.anchoranalysis.image.voxel.extracter |
Methods to read/copy/duplicate portions of voxels.
|
org.anchoranalysis.image.voxel.extracter.predicate |
Methods to find or count voxels that satisfy a predicate.
|
org.anchoranalysis.image.voxel.factory |
Creates new instances of
Voxels and VoxelsUntyped with specific data-types. |
org.anchoranalysis.image.voxel.iterator |
Utilities to iterate over voxel-locations in images and sub-regions of images.
|
org.anchoranalysis.image.voxel.iterator.intersecting |
Like
org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over
the intersecting regions of two entities. |
org.anchoranalysis.image.voxel.iterator.neighbor |
Iterating over a point's neighboring voxels.
|
org.anchoranalysis.image.voxel.iterator.neighbor.kernel |
Routines for moving a
KernelPointCursor around the
neighboring voxels of the point. |
org.anchoranalysis.image.voxel.iterator.predicate |
Functional-interfaces for processing different combinations of points and buffers that return a
boolean.
|
org.anchoranalysis.image.voxel.iterator.process |
Functional-interfaces for processing different combinations of points and buffers that do not
return a value.
|
org.anchoranalysis.image.voxel.iterator.process.buffer |
Functional-interfaces for processing different combinations of points and raw buffers, but not
VoxelBuffer . |
org.anchoranalysis.image.voxel.iterator.process.voxelbuffer |
Functional-interfaces for processing different combinations of points and
VoxelBuffer but not raw buffers. |
org.anchoranalysis.image.voxel.kernel |
Applying a kernel via
convolution to voxels.
|
org.anchoranalysis.image.voxel.kernel.count |
Kernels to count the number of voxels that are equal to a particular value.
|
org.anchoranalysis.image.voxel.kernel.morphological |
Kernels that apply morphological operations.
|
org.anchoranalysis.image.voxel.kernel.outline |
Kernel to find outline voxels on an object.
|
org.anchoranalysis.image.voxel.neighborhood |
A region in proximity to a voxel, encompassing this voxel as well as others.
|
org.anchoranalysis.image.voxel.object |
The fundamental data class that is an
ObjectMask
and related structures. |
org.anchoranalysis.image.voxel.object.morphological |
Morphological operations
applied to
ObjectMask s. |
org.anchoranalysis.image.voxel.object.morphological.predicate |
Predicates to match certain voxels as used in
org.anchoranalysis.image.voxel.object.morphological . |
org.anchoranalysis.image.voxel.projection |
Classes for calculating differnet kind of projections of voxel values across multiple buffers.
|
org.anchoranalysis.image.voxel.projection.extrema |
Classes for performing both a Maximum Intensity
Projection and a minimum projection.
|
org.anchoranalysis.image.voxel.resizer |
Different interpolator methods to use when scaling voxels.
|
org.anchoranalysis.image.voxel.statistics |
Statistics about aggregated voxel intensities.
|
org.anchoranalysis.image.voxel.thresholder |
Thresholding operations on voxels.
|
org.anchoranalysis.inference |
High-level classes for performing machine learning model inference.
|
org.anchoranalysis.inference.concurrency |
Specifying how many CPUs and GPUs can be allocated for some purpose.
|
org.anchoranalysis.io.bioformats |
Non-bean classes for filesystem I/O using Bioformats.
|
org.anchoranalysis.io.bioformats.bean |
Beans for filesystem I/O using Bioformats.
|
org.anchoranalysis.io.bioformats.bean.options |
User-specified options that can modify metadata or other attributes of a loaded Bioformats image.
|
org.anchoranalysis.io.bioformats.bean.writer |
Writing stacks to the file system using the Bioformats library.
|
org.anchoranalysis.io.bioformats.copyconvert |
Converts the byte stream opened by Bioformats into channels of particular data-type.
|
org.anchoranalysis.io.bioformats.copyconvert.tobyte |
Converts the byte stream opened by Bioformats into channels of
ByteBuffer . |
org.anchoranalysis.io.bioformats.copyconvert.tofloat |
Converts the byte stream opened by Bioformats into channels of
FloatBuffer . |
org.anchoranalysis.io.bioformats.copyconvert.toint |
Converts the byte stream opened by Bioformats into channels of
IntBuffer . |
org.anchoranalysis.io.bioformats.copyconvert.toshort |
Converts the byte stream opened by Bioformats into channels of
ShortBuffer . |
org.anchoranalysis.io.bioformats.metadata |
Reading metadata information from files using EXIF and/or other metadata headers.
|
org.anchoranalysis.io.generator |
Base-classes and utilities for generators, which write different types of objects to the file
system.
|
org.anchoranalysis.io.generator.collection |
Outputting more than one element collectively using a generator.
|
org.anchoranalysis.io.generator.combined |
Combining multiple generators into one.
|
org.anchoranalysis.io.generator.sequence |
Writing a sequence of elements using a generator.
|
org.anchoranalysis.io.generator.sequence.pattern |
A particular naming pattern files follow when outputted.
|
org.anchoranalysis.io.generator.serialized |
Generators for writing serialized objects.
|
org.anchoranalysis.io.generator.tabular |
Generators for writing tabular data, including CSV.
|
org.anchoranalysis.io.generator.text |
Generators for writing textual data, including strings.
|
org.anchoranalysis.io.generator.xml |
Generators for writing XML data.
|
org.anchoranalysis.io.imagej.bean.interpolator |
Performing interpolation with ImageJ.
|
org.anchoranalysis.io.imagej.bean.stack.writer |
Raster-writers that use ImageJ to write images to the filesystem.
|
org.anchoranalysis.io.imagej.convert |
Converts to and from ImageJ data-structures for images.
|
org.anchoranalysis.io.imagej.resizer |
Image interpolation when scaling using ImageJ.
|
org.anchoranalysis.io.input |
Classes relating to creating inputs for an experiment / task.
|
org.anchoranalysis.io.input.bean |
Beans related to collecting inputs from the file-system for an experiment.
|
org.anchoranalysis.io.input.bean.dictionary |
Methods to provide a
Dictionary . |
org.anchoranalysis.io.input.bean.files |
Methods to provide a collection of
File s. |
org.anchoranalysis.io.input.bean.grouper |
Determines how inputs are aggregated into groups, if at all.
|
org.anchoranalysis.io.input.bean.namer |
Beans to derive names (compact unique identifiers) from files.
|
org.anchoranalysis.io.input.bean.path |
Beans pertaining to manipulating and matching against file-paths.
|
org.anchoranalysis.io.input.bean.path.matcher |
Beans to find a subset of files that match a particular conditions on their paths.
|
org.anchoranalysis.io.input.bean.path.provider |
Methods to provide a single file-path.
|
org.anchoranalysis.io.input.csv |
Classes for reading comma-separated-values (CSV) files.
|
org.anchoranalysis.io.input.file |
Non-bean classes that relate to using files during inputting.
|
org.anchoranalysis.io.input.grouper |
Non-bean classes pertaining grouping inputs.
|
org.anchoranalysis.io.input.path |
Non-bean classes pertaining to getting/extracting/manipulating paths as used in inputting.
|
org.anchoranalysis.io.input.path.matcher |
Non-bean classes to help with
org.anchoranalysis.io.input.bean.path.matcher . |
org.anchoranalysis.io.output.bean |
Beans for the framework around writing files to the file-system.
|
org.anchoranalysis.io.output.bean.enabled |
Beans indicating whether a particular output is enabled or not.
|
org.anchoranalysis.io.output.bean.path.prefixer |
Beans for generating paths for outputting files by adding a prefix, suffix etc.
|
org.anchoranalysis.io.output.bean.rules |
Rules for determining if a particular output is enabled or not in a context of a hierarchy.
|
org.anchoranalysis.io.output.enabled |
Non-beans pertaining to whether a particular output is enabled or not.
|
org.anchoranalysis.io.output.enabled.multi |
Non-beans that pertain to whether multiple-levels have outputs that are enabled or not.
|
org.anchoranalysis.io.output.enabled.single |
Non-beans that pertain to whether a single level has outputs that are enabled or not.
|
org.anchoranalysis.io.output.error |
Exceptions that may be thrown when writing files to the file-system.
|
org.anchoranalysis.io.output.namestyle |
Methods of naming a file with an index in the file-name.
|
org.anchoranalysis.io.output.outputter |
Classes for outputting to particular directories.
|
org.anchoranalysis.io.output.outputter.directory |
BoundDirectory and related classes. |
org.anchoranalysis.io.output.path.prefixer |
Non-beans for generating paths for outputting files by adding a prefix, suffix etc.
|
org.anchoranalysis.io.output.recorded |
Classes for recording the output-names used as they are written / queried.
|
org.anchoranalysis.io.output.writer |
Allows a generators to write element(s) to the filesystem.
|
org.anchoranalysis.io.output.xml |
Outputting XML to the file-system.
|
org.anchoranalysis.launcher |
Parent package and entry-point classes for the Anchor command-line launcher application.
|
org.anchoranalysis.launcher.config |
Specifies a configuration of the launcher for a particular application.
|
org.anchoranalysis.launcher.executor |
Runs a particular experiment after identifying necessary paths and input files.
|
org.anchoranalysis.launcher.executor.selectparam |
Different methods of selecting a object
T that is used as a parameter for an experiment. |
org.anchoranalysis.launcher.executor.selectparam.experiment |
SelectParam s for loading a Experiment . |
org.anchoranalysis.launcher.executor.selectparam.path |
SelectParam s for loading a Optional<Path> for inputs, outputs or tasks. |
org.anchoranalysis.launcher.executor.selectparam.path.convert |
Converting paths to/from different formats as needed by
org.anchoranalysis.launcher.executor.selectparam.path . |
org.anchoranalysis.launcher.options |
A centralized location for all command-line options used by the launcher.
|
org.anchoranalysis.launcher.options.process |
Adding/removing/changing the arguments (input and output) from the experiment via
command-line-options.
|
org.anchoranalysis.launcher.resources |
Reading and integrating resources for the launcher.
|
org.anchoranalysis.launcher.run |
Parses command-line arguments and runs an experiment.
|
org.anchoranalysis.launcher.run.tasks |
Loading and displaying pre-defined tasks.
|
org.anchoranalysis.math.arithmetic |
Performing primitive type conversion, counting and summing.
|
org.anchoranalysis.math.equation |
Solving or manipulating equations.
|
org.anchoranalysis.math.histogram |
The
Histogram data class and related operations. |
org.anchoranalysis.math.optimization |
Mathemathical optimization
algorithms.
|
org.anchoranalysis.math.relation |
Different kinds of binary-relations.
|
org.anchoranalysis.math.statistics |
Data structures and algorithms to calculate statistics.
|
org.anchoranalysis.math.statistics.moment |
Calculates first and second image
moments from a covariance matrix of points.
|
org.anchoranalysis.mpp.bean |
Beans pertaining to marked-point-processes.
|
org.anchoranalysis.mpp.bean.bound |
Lower and upper limits set around variables.
|
org.anchoranalysis.mpp.bean.bound.rotation |
Bounds on how to rotate an entity in Euclidean space.
|
org.anchoranalysis.mpp.bean.mark |
Beans generally related to
Mark s. |
org.anchoranalysis.mpp.bean.mark.factory |
Beans related to creating
Mark s. |
org.anchoranalysis.mpp.bean.points |
Operations based on sets of points.
|
org.anchoranalysis.mpp.bean.points.fitter |
Fitting structures to sets of points.
|
org.anchoranalysis.mpp.bean.proposer |
Proposing
Mark s or other data-structures with particular
attributes. |
org.anchoranalysis.mpp.bean.provider | |
org.anchoranalysis.mpp.bean.regionmap |
Voxel subregions of
Mark s. |
org.anchoranalysis.mpp.feature.addcriteria |
Criteria for adding edges during optimization of marked-point-processes.
|
org.anchoranalysis.mpp.feature.bean.energy.element |
Implementations and helper classes for calculating energy during an energy-minimization
optimization scheme.
|
org.anchoranalysis.mpp.feature.bean.energy.scheme |
Creating
EnergyScheme s. |
org.anchoranalysis.mpp.feature.bean.mark |
Features calculated on a
Mark . |
org.anchoranalysis.mpp.feature.bean.mark.collection |
Features calculated on a
org.anchoranalysis.mpp.feature.bean.mark.collection . |
org.anchoranalysis.mpp.feature.energy |
Non-bean classes pertaining to calculating energy during an energy-minimization optimization
scheme.
|
org.anchoranalysis.mpp.feature.energy.marks |
Non-bean classes pertaining to calculating energy of {org.anchoranalysis.mpp.mark.Mark}s.
|
org.anchoranalysis.mpp.feature.energy.saved |
Saved snapshots of energy-calculations.
|
org.anchoranalysis.mpp.feature.energy.scheme |
Factorized form of storing the energy during an energy-minimization optimization scheme.
|
org.anchoranalysis.mpp.feature.error |
Exceptions relating to
Feature s involving classes from
anchor-mpp . |
org.anchoranalysis.mpp.feature.input |
Inputs to mark-point-processes related
Feature s. |
org.anchoranalysis.mpp.feature.mark |
Non-bean classes for calculating feature-values related to
Mark s. |
org.anchoranalysis.mpp.index |
Indexing voxel-values in different ways.
|
org.anchoranalysis.mpp.index.factory |
Factories for classes in
org.anchoranalysis.mpp.index . |
org.anchoranalysis.mpp.init |
Parameters used to initialize certain types of beans.
|
org.anchoranalysis.mpp.io.bean.input |
Beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.io.bean.report.feature |
Beans for communicating feature-values from data-structures in human-readable manner.
|
org.anchoranalysis.mpp.io.input |
Non-beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.io.marks |
Non-beans to help write visualization of
Mark s to the
filesystem. |
org.anchoranalysis.mpp.io.marks.generator | |
org.anchoranalysis.mpp.io.output |
Non-beans for writing data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.mark |
Non-bean classes related to
Mark s. |
org.anchoranalysis.mpp.mark.conic |
Mark s implementing conic sections. |
org.anchoranalysis.mpp.mark.points |
Mark s implementing structures based on points. |
org.anchoranalysis.mpp.mark.voxelized |
A mark after a voxel-representation has been inferred.
|
org.anchoranalysis.mpp.mark.voxelized.memo |
Memoization of
VoxelizedMark s. |
org.anchoranalysis.mpp.overlap |
Calculating overlaps between two
Mark s. |
org.anchoranalysis.mpp.overlay | |
org.anchoranalysis.mpp.pair |
Pairs of
Mark s. |
org.anchoranalysis.mpp.proposer |
Non-bean classes for proposing
Mark s or other data-structures
with particular attributes. |
org.anchoranalysis.mpp.proposer.error |
Recording errors related to proposing
Mark s or other
data-structures with particular attributes. |
org.anchoranalysis.mpp.segment.bean |
Beans for segmentation algorithms related to marked-point-processes.
|
org.anchoranalysis.mpp.segment.bean.define |
DefineOutputter and its sub-classes. |
org.anchoranalysis.mpp.segment.bean.optimization |
Schemes for finding optima (minima or maxima) via optimization.
|
org.anchoranalysis.mpp.segment.bean.optimization.feedback |
Providing feedback on the progress of a
OptimizationScheme . |
org.anchoranalysis.mpp.segment.bean.optimization.kernel |
Base classes for kernels that transition a configuration of marks (a
MarkCollection ) into an altered version. |
org.anchoranalysis.mpp.segment.bean.optimization.termination |
In which circumstances to terminate an
OptimizationScheme that is underway. |
org.anchoranalysis.mpp.segment.define |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.define |
org.anchoranalysis.mpp.segment.optimization |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization |
org.anchoranalysis.mpp.segment.optimization.feedback |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization.feedback |
org.anchoranalysis.mpp.segment.optimization.feedback.aggregate |
Aggregating optimization feedback over time.
|
org.anchoranalysis.mpp.segment.optimization.feedback.period |
Collecting optimization feedback periodically.
|
org.anchoranalysis.mpp.segment.optimization.kernel |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization.kernel |
org.anchoranalysis.mpp.segment.optimization.step |
Describes an individual step in the optimization.
|
org.anchoranalysis.mpp.segment.transformer |
Mapping one type of optimization state to another.
|
org.anchoranalysis.overlay |
Overlay s and related classes involving drawing entities on top
of an image. |
org.anchoranalysis.overlay.bean |
Beans relating to drawing an
Overlay on an image. |
org.anchoranalysis.overlay.collection |
Collections of
Overlay s. |
org.anchoranalysis.overlay.object |
An implementation of an
Overlay that draws an ObjectMask on an image. |
org.anchoranalysis.overlay.writer |
Drawing an overlay on an image.
|
org.anchoranalysis.plugin.annotation.bean.aggregate |
Beans to combine two or more annotations.
|
org.anchoranalysis.plugin.annotation.bean.comparer |
Comparing the similarity of annotations from two images to each other.
|
org.anchoranalysis.plugin.annotation.bean.comparison |
Task to compare a set of annotations to a segmentation or another set of annotations.
|
org.anchoranalysis.plugin.annotation.bean.comparison.assigner |
Pairs annotations from two different sets, creating an assignment of some type.
|
org.anchoranalysis.plugin.annotation.bean.file |
FilesProvider s for providing annotations. |
org.anchoranalysis.plugin.annotation.bean.label |
A label as used for annotating.
|
org.anchoranalysis.plugin.annotation.bean.strategy |
Strategies for how to annotate an image, such label per image etc.
|
org.anchoranalysis.plugin.annotation.comparison |
Non-bean classes for comparing two sets of annotations.
|
org.anchoranalysis.plugin.annotation.counter |
Utility classes for counting images incrementally.
|
org.anchoranalysis.plugin.fiji.bean.channel.grayscalereconstruction |
Morphological grayscale-reconstruction algorithm.
|
org.anchoranalysis.plugin.fiji.bean.channel.provider |
Implementations of
ChannelProvider that use FIJI. |
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance |
Euclidean Distance Transform
implementations via FIJI.
|
org.anchoranalysis.plugin.fiji.bean.define |
Implementations of
DefineAdderBean that use FIJI. |
org.anchoranalysis.plugin.fiji.bean.mask.provider |
Implementations of
MaskProvider that use FIJI. |
org.anchoranalysis.plugin.fiji.bean.threshold |
Implementations of
Thresholder that use FIJI. |
org.anchoranalysis.plugin.image.bean.blur |
Filters that perform blurring.
|
org.anchoranalysis.plugin.image.bean.channel.aggregator |
Implementations of
ConvertChannelTo and ConvertChannelToWithHistogram . |
org.anchoranalysis.plugin.image.bean.channel.convert |
Implementations of
ConvertChannelTo and ConvertChannelToWithHistogram . |
org.anchoranalysis.plugin.image.bean.channel.provider |
Implementations of
ChannelProvider that are
generic base-classes or otherwise abstract or general. |
org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic |
Implementations of
ChannelProvider that perform
arithmetic on voxels in one or more Channel s. |
org.anchoranalysis.plugin.image.bean.channel.provider.assign |
Implementations of
ChannelProvider that sets the
values of the voxels in a Channel . |
org.anchoranalysis.plugin.image.bean.channel.provider.convert |
Implementations of
ChannelProvider that converts a
Channel from one voxel-type to another. |
org.anchoranalysis.plugin.image.bean.channel.provider.gradient |
Implementations of
ChannelProvider that calculate
the gradient of a Channel 's voxels in one or more
dimensions. |
org.anchoranalysis.plugin.image.bean.channel.provider.intensity |
Implementations of
ChannelProvider that manipulate
the intensity-values of the voxels of a Channel 's
voxels. |
org.anchoranalysis.plugin.image.bean.channel.provider.mask |
Implementations of
ChannelProvider that involve
conversion from or application of Mask s. |
org.anchoranalysis.plugin.image.bean.channel.provider.object |
Implementations of
ChannelProvider that involve
conversion from or application of ObjectMask s. |
org.anchoranalysis.plugin.image.bean.channel.provider.score |
Implementations of
ChannelProvider that assign a
score to particular subregions of a channel. |
org.anchoranalysis.plugin.image.bean.channel.provider.slice |
Implementations of
ChannelProvider that process 3D
channels slice-by-slice. |
org.anchoranalysis.plugin.image.bean.color.provider |
Implementations of
ColorProvider . |
org.anchoranalysis.plugin.image.bean.dictionary |
Beans pertaining to
Dictionary . |
org.anchoranalysis.plugin.image.bean.dimensions.provider |
Implementations of
DimensionsProvider . |
org.anchoranalysis.plugin.image.bean.histogram.provider |
Implementations of
HistogramProvider . |
org.anchoranalysis.plugin.image.bean.histogram.threshold |
Thresholding of intensity values represented in at
Histogram . |
org.anchoranalysis.plugin.image.bean.mask.provider |
Implementations of
MaskProvider . |
org.anchoranalysis.plugin.image.bean.mask.provider.combine |
Implementations of
MaskProvider that combine
existing providers. |
org.anchoranalysis.plugin.image.bean.mask.provider.convert |
Implementations of
MaskProvider that convert
providers of other types to ObjectMask s. |
org.anchoranalysis.plugin.image.bean.mask.provider.morphological |
Implementations of
MaskProvider that implement
morphological operations. |
org.anchoranalysis.plugin.image.bean.mask.provider.predicate |
Provides if-else conditions to a
MaskProvider . |
org.anchoranalysis.plugin.image.bean.mask.provider.segment | |
org.anchoranalysis.plugin.image.bean.mask.provider.slice |
Implementations of
MaskProvider that process 3D
masks slice-by-slice. |
org.anchoranalysis.plugin.image.bean.object.filter |
Implementations of
ObjectFilter . |
org.anchoranalysis.plugin.image.bean.object.filter.collective |
Implementations of
ObjectFilter that assess each
element in a collection collectively. |
org.anchoranalysis.plugin.image.bean.object.filter.combine |
Implementations of
ObjectFilter that combine two or
more other ObjectFilter s. |
org.anchoranalysis.plugin.image.bean.object.filter.independent |
Implementations of
ObjectFilter that
independently assess each element in a collection. |
org.anchoranalysis.plugin.image.bean.object.match |
Implementations of
ObjectMatcher . |
org.anchoranalysis.plugin.image.bean.object.provider |
Implementations of
ObjectCollectionProvider . |
org.anchoranalysis.plugin.image.bean.object.provider.connected |
Implementations of
ObjectCollectionProvider
involving connected-components. |
org.anchoranalysis.plugin.image.bean.object.provider.feature |
Implementations of
ObjectCollectionProvider
involving feature calculation. |
org.anchoranalysis.plugin.image.bean.object.provider.filter |
Implementations of
ObjectCollectionProvider that
filter objects. |
org.anchoranalysis.plugin.image.bean.object.provider.mask |
Implementations of
ObjectCollectionProvider
involving a Mask . |
org.anchoranalysis.plugin.image.bean.object.provider.merge |
Implementations of
ObjectCollectionProvider
involving merging objects together. |
org.anchoranalysis.plugin.image.bean.object.provider.morphological |
Implementations of
ObjectCollectionProvider
involving morphological operations. |
org.anchoranalysis.plugin.image.bean.object.provider.segment |
Implementations of
ObjectCollectionProvider
involving segmentation. |
org.anchoranalysis.plugin.image.bean.object.provider.slice |
Implementations of
ObjectCollectionProvider
involving z-slice processing. |
org.anchoranalysis.plugin.image.bean.object.provider.split |
Implementations of
ObjectCollectionProvider
involving splitting objects into smaller objects. |
org.anchoranalysis.plugin.image.bean.object.segment.channel |
Implementations of
SegmentChannelIntoObjects . |
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.minima |
Minima imposition for a Watershed transformation.
|
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.minima.grayscalereconstruction |
Grayscale reconstruction to support the Watershed transformation.
|
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong |
Implementation of a Watershed transformation
based on Yeong et al.
|
org.anchoranalysis.plugin.image.bean.object.segment.reduce |
Strategies for reducing the number of elements with a list by merging/removing lower-confidence
elements that overlap.
|
org.anchoranalysis.plugin.image.bean.scale |
Implementations of
ScaleCalculator for calculating
a scaling-factor from dimensions. |
org.anchoranalysis.plugin.image.bean.segment.binary |
Implementations of
BinarySegmentation . |
org.anchoranalysis.plugin.image.bean.stack.provider |
Implementations of
StackProvider . |
org.anchoranalysis.plugin.image.bean.stack.provider.color |
Implementations of
StackProvider that color
portions of an image. |
org.anchoranalysis.plugin.image.bean.thumbnail.object |
Implementations of
ThumbnailFromObjects . |
org.anchoranalysis.plugin.image.bean.thumbnail.stack |
Implementations of
ThumbnailFromStack . |
org.anchoranalysis.plugin.image.channel |
Non-beans for operations or calculations relating to
Channel s. |
org.anchoranalysis.plugin.image.feature.bean.dimensions |
Features that are calculated from
Dimensions . |
org.anchoranalysis.plugin.image.feature.bean.histogram.statistic |
Implementations of
FeatureHistogram that calculate
statistics. |
org.anchoranalysis.plugin.image.feature.bean.histogram.threshold |
Implementations of
FeatureHistogram that perform
thresholding. |
org.anchoranalysis.plugin.image.feature.bean.list |
Implementations of
FeatureListProvider . |
org.anchoranalysis.plugin.image.feature.bean.list.pair |
Implementations of
FeatureListProvider with
input-type FeatureInputPairObjects . |
org.anchoranalysis.plugin.image.feature.bean.list.permute |
Implementations of
FeatureListProvider that derive
new features with permuted property-values. |
org.anchoranalysis.plugin.image.feature.bean.metadata |
Implementations of
FeatureImageMetadata . |
org.anchoranalysis.plugin.image.feature.bean.morphological |
Beans that affects how morphological operations occur.
|
org.anchoranalysis.plugin.image.feature.bean.object.collection |
Implementations of
FeatureObjectCollection . |
org.anchoranalysis.plugin.image.feature.bean.object.combine |
Features from combinations of
ObjectMask s. |
org.anchoranalysis.plugin.image.feature.bean.object.pair |
Features from pairs of
ObjectMask s. |
org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap |
Features that calculate the degree of overlap between two
ObjectMask s. |
org.anchoranalysis.plugin.image.feature.bean.object.pair.touching |
Features that calculate how many other objects an
ObjectMask directly neighbors. |
org.anchoranalysis.plugin.image.feature.bean.object.single |
Implementations of
FeatureSingleObject . |
org.anchoranalysis.plugin.image.feature.bean.object.single.border |
Implementations of
FeatureSingleObject that determine if an
object lies at the border of an image. |
org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox |
Implementations of
FeatureSingleObject that consider an
object's bounding-box. |
org.anchoranalysis.plugin.image.feature.bean.object.single.energy |
Implementations of
FeatureSingleObject that reference a
particular Channel in the associated EnergyStack . |
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity |
Implementations of
FeatureSingleObject that measure an object's
intensity on a corresponding Channel . |
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient |
Implementations of
FeatureSingleObject that measure an object's
gradient from corresponding Channel s storing the
gradient. |
org.anchoranalysis.plugin.image.feature.bean.object.single.moments |
Implementations of
FeatureSingleObject based on calculating image moments, with or without image
intensity. |
org.anchoranalysis.plugin.image.feature.bean.object.single.morphological |
Implementations of
FeatureSingleObject that implement
morphological operations. |
org.anchoranalysis.plugin.image.feature.bean.object.single.shape |
Implementations of
FeatureSingleObject that measure the shape
of the ObjectMask . |
org.anchoranalysis.plugin.image.feature.bean.object.single.shared |
Implementations of
FeatureSingleObject that use SharedObjects for calculations. |
org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting |
Implementations of
FeatureSingleObject that use SharedObjects for calculations, and measure
the degree of intersection between objects. |
org.anchoranalysis.plugin.image.feature.bean.object.single.slice |
Implementations of
FeatureSingleObject that processes an object
slice-by-slice in the z-dimension. |
org.anchoranalysis.plugin.image.feature.bean.object.single.surface |
Implementations of
FeatureSingleObject that measures aspects of
the surface of an ObjectMask . |
org.anchoranalysis.plugin.image.feature.bean.physical |
Beans involving physical units for measurement.
|
org.anchoranalysis.plugin.image.feature.bean.score |
Implementations of
VoxelScore . |
org.anchoranalysis.plugin.image.feature.bean.shared |
Beans involving
SharedObjects . |
org.anchoranalysis.plugin.image.feature.bean.shared.object |
Beans involving
SharedObjects and
ObjectCollection . |
org.anchoranalysis.plugin.image.feature.bean.stack.intensity |
Implementations of
FeatureStack or other features
that involve processing a Stack . |
org.anchoranalysis.plugin.image.feature.bean.stack.object |
Implementations of
FeatureStack that process an
ObjectCollection . |
org.anchoranalysis.plugin.image.feature.object |
Non-bean classes that help calculate features from
ObjectMask s. |
org.anchoranalysis.plugin.image.feature.object.calculation.delegate |
Implementations of
CalculationPart as used by
features elsewhere in this package. |
org.anchoranalysis.plugin.image.feature.object.calculation.single |
Implementations of
CalculationPart that that
process a single ObjectMask . |
org.anchoranalysis.plugin.image.feature.object.calculation.single.morphological |
Implementations of
CalculationPart that that
process a single ObjectMask - with morphological operations. |
org.anchoranalysis.plugin.image.feature.stack.calculation |
Implementations of
CalculationPart that process
Stack s as used by features elsewhere in this package. |
org.anchoranalysis.plugin.image.intensity |
Non-bean for operations or calculations relating to intensity.
|
org.anchoranalysis.plugin.image.intensity.level |
Non-beans for calculating a thresholding level from itensity values.
|
org.anchoranalysis.plugin.image.object |
Non-beans pertaining to
ObjectMask s. |
org.anchoranalysis.plugin.image.object.merge |
Merging
ObjectMask s. |
org.anchoranalysis.plugin.image.object.merge.condition |
Conditions for merging
ObjectMask s. |
org.anchoranalysis.plugin.image.object.merge.priority |
Assigning priority when merging
ObjectMask s. |
org.anchoranalysis.plugin.image.provider |
Non-bean classes pertaining to
Provider s. |
org.anchoranalysis.plugin.image.segment.thresholder.slice |
Non-beans pertaining to segmenting a z-stack slice-by-slice.
|
org.anchoranalysis.plugin.image.segment.watershed.encoding |
Encoding voxels in a watershed-transformation implementation.
|
org.anchoranalysis.plugin.image.task.bean |
A parent package for many different kinds of tasks.
|
org.anchoranalysis.plugin.image.task.bean.combine |
Combining multiple images together into a single image.
|
org.anchoranalysis.plugin.image.task.bean.feature |
Tasks pertaining to
Feature s. |
org.anchoranalysis.plugin.image.task.bean.feature.source |
Source of rows in feature-tables with
FeatureSource and derived classes. |
org.anchoranalysis.plugin.image.task.bean.format |
Tasks for converting image-formats.
|
org.anchoranalysis.plugin.image.task.bean.format.convertstyle |
Different approaches for converting sets of channels (RGB, independently etc.) to another image
format.
|
org.anchoranalysis.plugin.image.task.bean.grouped |
Tasks that involved stacks (usually each channel from an image) that are somehow
grouped-together.
|
org.anchoranalysis.plugin.image.task.bean.grouped.histogram |
Task(s) to export histograms of intensity values.
|
org.anchoranalysis.plugin.image.task.bean.grouped.selectchannels |
Selecting a subset of a set of channels.
|
org.anchoranalysis.plugin.image.task.bean.labeller |
Associating labels with images.
|
org.anchoranalysis.plugin.image.task.bean.scale |
Tasks to scale an image.
|
org.anchoranalysis.plugin.image.task.bean.segment |
Tasks to segment an image.
|
org.anchoranalysis.plugin.image.task.bean.slice |
Tasks that process on one or more slices from a z-stack.
|
org.anchoranalysis.plugin.image.task.channel.aggregator | |
org.anchoranalysis.plugin.image.task.feature |
Non-bean classes pertaining to
Feature s as used in tasks. |
org.anchoranalysis.plugin.image.task.feature.calculator |
Non-beans for calculating
Feature s. |
org.anchoranalysis.plugin.image.task.grouped |
Non-bean classes about grouping channels or other inputs.
|
org.anchoranalysis.plugin.image.task.labeller |
Non-bean classes about labelling images.
|
org.anchoranalysis.plugin.image.task.segment |
Non-bean classes for image-segmentation.
|
org.anchoranalysis.plugin.image.task.size |
Non-bean classes pertaining to determining the size of an image.
|
org.anchoranalysis.plugin.image.task.slice |
Non-bean classes pertaining to combining stacks into a single stack.
|
org.anchoranalysis.plugin.image.task.stack |
Non-bean classes pertaining to stacks and channels as used in tasks.
|
org.anchoranalysis.plugin.image.thumbnail |
Non-bean classes for thumbnail creation.
|
org.anchoranalysis.plugin.imagej.bean.channel.provider |
Implementations of
ChannelProvider that call ImageJ. |
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter | |
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments |
Non-linear filters using ImageJ that use the statistical moments of the
intensity values in the kernel.
|
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank |
Non-linear filters using ImageJ that use the statistical rank of the intensity values in the
kernel.
|
org.anchoranalysis.plugin.imagej.bean.define |
Implementations of
DefineAdderBean that call ImageJ. |
org.anchoranalysis.plugin.imagej.bean.mask.provider |
Implementations of
MaskProvider that call ImageJ. |
org.anchoranalysis.plugin.imagej.bean.object.provider |
Implementations of
ObjectCollectionProvider that
call ImageJ. |
org.anchoranalysis.plugin.imagej.bean.object.segment | |
org.anchoranalysis.plugin.imagej.bean.stack.provider |
Implementations of
StackProvider that call
ImageJ. |
org.anchoranalysis.plugin.imagej.bean.threshold |
Implementations of
Thresholder that call ImageJ. |
org.anchoranalysis.plugin.imagej.channel.provider |
Implementations of
ChannelProvider that call ImageJ. |
org.anchoranalysis.plugin.imagej.mask |
Non-bean classes involving
ObjectMask that call ImageJ. |
org.anchoranalysis.plugin.io.bean.channel.map |
Implementations of
ChannelMapCreator . |
org.anchoranalysis.plugin.io.bean.file.copy.method |
Methods for copying files on the file-system.
|
org.anchoranalysis.plugin.io.bean.file.copy.naming |
Rules for preserving or changing the naming of files when copying on the file-system.
|
org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster |
Implementations of
CopyFilesNaming
that perform clustering of files. |
org.anchoranalysis.plugin.io.bean.file.group |
Grouping files together so that they collectively represent a single entity.
|
org.anchoranalysis.plugin.io.bean.file.group.check |
Tests that are applied when grouping files in
org.anchoranalysis.plugin.io.bean.file.group |
org.anchoranalysis.plugin.io.bean.file.group.parser |
Parsing file-paths to determine file-grouping in
org.anchoranalysis.plugin.io.bean.file.group |
org.anchoranalysis.plugin.io.bean.file.namer |
Implementations of
FileNamer . |
org.anchoranalysis.plugin.io.bean.file.namer.patternspan |
Implementations of
FileNamer that look for a
pattern across many files. |
org.anchoranalysis.plugin.io.bean.file.path |
Beans to specify a file-path.
|
org.anchoranalysis.plugin.io.bean.file.path.prefixer |
Implementations of
PathPrefixer . |
org.anchoranalysis.plugin.io.bean.file.pattern |
Extracting a pattern from a file-path.
|
org.anchoranalysis.plugin.io.bean.file.provider |
Implementations of
FilesProvider . |
org.anchoranalysis.plugin.io.bean.grouper |
Implementations of
Grouper . |
org.anchoranalysis.plugin.io.bean.input |
Implementations of
InputManager . |
org.anchoranalysis.plugin.io.bean.input.channel |
InputManager s that accept a set of
named-channels. |
org.anchoranalysis.plugin.io.bean.input.files |
InputManager s that accept a set of named-files. |
org.anchoranalysis.plugin.io.bean.input.files.provider |
Implementations of
FilesProvider . |
org.anchoranalysis.plugin.io.bean.input.filter |
Implementations of
InputManager that filter inputs. |
org.anchoranalysis.plugin.io.bean.input.stack |
Implementations of
InputManager that process Stack s. |
org.anchoranalysis.plugin.io.bean.metadata.header |
Different types of image-file-formats whose headers can provide
ImageMetadata . |
org.anchoranalysis.plugin.io.bean.metadata.reader |
Implementations of
ImageMetadataReader . |
org.anchoranalysis.plugin.io.bean.path.derive |
Implementations of
DerivePath . |
org.anchoranalysis.plugin.io.bean.stack.reader |
Implementations of
StackReader . |
org.anchoranalysis.plugin.io.bean.stack.writer |
Implementations of
StackWriter . |
org.anchoranalysis.plugin.io.bean.summarizer |
Summarizing a set of elements into a descriptive-string.
|
org.anchoranalysis.plugin.io.bean.summarizer.image |
Implementations of
Summarizer that summarize
images. |
org.anchoranalysis.plugin.io.bean.summarizer.input |
Implementations of
Summarizer that summarize
generically InputFromManager s. |
org.anchoranalysis.plugin.io.bean.summarizer.path |
Implementations of
Summarizer that summarize
generically Path s. |
org.anchoranalysis.plugin.io.bean.task |
Implementations of
Task related to file-system
I/O. |
org.anchoranalysis.plugin.io.file.copy |
Non-bean classes to help tasks in
org.anchoranalysis.plugin.io.bean.file.copy . |
org.anchoranalysis.plugin.io.input.filter |
Non-bean classes to help tasks in
org.anchoranalysis.plugin.io.bean.input.filter . |
org.anchoranalysis.plugin.io.input.path |
Non-bean classes to help in processing paths.
|
org.anchoranalysis.plugin.io.multifile |
Non-bean classes to help use multiple files to represent a single
Stack . |
org.anchoranalysis.plugin.io.multifile.buffer |
Buffers used in
org.anchoranalysis.plugin.io.multifile . |
org.anchoranalysis.plugin.io.naming.interval |
How to write parts of a time-interval in a file-name.
|
org.anchoranalysis.plugin.io.shared |
Objects used in shared-state in
Task s in this
plugin. |
org.anchoranalysis.plugin.io.xml |
Reading and writing metadata XML.
|
org.anchoranalysis.plugin.ml.bean.classifier |
Beans that perform classification in some way.
|
org.anchoranalysis.plugin.ml.bean.cluster |
Beans that perform clustering in some way.
|
org.anchoranalysis.plugin.mpp.bean.addcriteria |
Implementations of
AddCriteriaPair involving
Mark or related classes. |
org.anchoranalysis.plugin.mpp.bean.bound |
Implementations of
MarkBoundsProvider . |
org.anchoranalysis.plugin.mpp.bean.check |
Implementations of
CheckMark . |
org.anchoranalysis.plugin.mpp.bean.contour |
Retrieving the contour outline pixels along the exterior outer contour of an
ObjectMask . |
org.anchoranalysis.plugin.mpp.bean.contour.visitscheduler |
The
VisitScheduler and related
classes, as used in TraverseOuterContourOnImage . |
org.anchoranalysis.plugin.mpp.bean.define | |
org.anchoranalysis.plugin.mpp.bean.object.provider |
Implementations of
ObjectCollectionProvider . |
org.anchoranalysis.plugin.mpp.bean.proposer.mark.collection |
Implementations of
MarkCollectionProposer . |
org.anchoranalysis.plugin.mpp.bean.proposer.mark.single |
Implementations of
MarkProposer . |
org.anchoranalysis.plugin.mpp.bean.proposer.mark.single.fromcollection |
Implementations of
MarkFromCollectionProposer . |
org.anchoranalysis.plugin.mpp.bean.proposer.merge |
Implementations of
MarkMergeProposer . |
org.anchoranalysis.plugin.mpp.bean.proposer.orientation |
Implementations of
OrientationProposer . |
org.anchoranalysis.plugin.mpp.bean.proposer.points |
Implementations of
PointsProposer . |
org.anchoranalysis.plugin.mpp.bean.proposer.points.contour |
Finding a point on the external outer contour of an
ObjectMask . |
org.anchoranalysis.plugin.mpp.bean.proposer.points.fromorientation |
PointsFromOrientationProposer
and implementations. |
org.anchoranalysis.plugin.mpp.bean.proposer.position |
Implementations of
PositionProposer involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.bean.proposer.radii |
Implementations of
RadiiProposer involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.bean.proposer.scalar |
Implementations of
ScalarProposer involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.bean.proposer.split |
Implementations of
MarkSplitProposer . |
org.anchoranalysis.plugin.mpp.bean.provider.collection |
Implementation of
MarkCollectionProvider . |
org.anchoranalysis.plugin.mpp.bean.provider.single |
Implementations of
SingleMarkProvider . |
org.anchoranalysis.plugin.mpp.bean.region |
Implementations of
MarkRegion . |
org.anchoranalysis.plugin.mpp.bean.segment.binary |
Implementations of
BinarySegmentation
involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.bean.stack.provider |
Implementations of
StackProvider involving
Mark or related classes. |
org.anchoranalysis.plugin.mpp.contour |
Performs a walk on every voxel on the contour of an object-mask.
|
org.anchoranalysis.plugin.mpp.contour.distance |
A list of visited pixels which forms one contiguous path where each voxel neighbors each other.
|
org.anchoranalysis.plugin.mpp.contour.path |
A set of contiguously neighboring points along the outline of an object.
|
org.anchoranalysis.plugin.mpp.contour.path.merge |
Merging multiple
ContiguousVoxelPath together. |
org.anchoranalysis.plugin.mpp.contour.path.merge.strategy |
Strategies on which
ContiguousVoxelPath should
be prioritized for merging. |
org.anchoranalysis.plugin.mpp.experiment.bean.convert |
Converting from
NamedChannelsInput to the
input-type expected by a Task . |
org.anchoranalysis.plugin.mpp.experiment.bean.define |
Tasks that use a
DefineOutputter or related
classes. |
org.anchoranalysis.plugin.mpp.experiment.bean.feature.report.task |
Tasks that calculate and export
ReportFeature s. |
org.anchoranalysis.plugin.mpp.experiment.bean.feature.source |
Implementations of
FeatureSource . |
org.anchoranalysis.plugin.mpp.experiment.bean.objects |
Tasks involving
ObjectMask s. |
org.anchoranalysis.plugin.mpp.experiment.bean.objects.columndefinition |
Defining columns used in
ExportObjectsFromCSV . |
org.anchoranalysis.plugin.mpp.experiment.bean.segment |
Tasks that segment an image to produce a
MarkCollection . |
org.anchoranalysis.plugin.mpp.experiment.objects |
Non-bean classes used in
org.anchoranalysis.plugin.mpp.experiment.bean.objects . |
org.anchoranalysis.plugin.mpp.experiment.objects.csv |
Reading rows from a CSV file.
|
org.anchoranalysis.plugin.mpp.experiment.shared |
Shared-state use across tasks in this JAR.
|
org.anchoranalysis.plugin.mpp.feature.bean.mark.collection |
Implementations of
FeatureMarkCollection . |
org.anchoranalysis.plugin.mpp.feature.bean.mark.direction |
Implementations of
FeatureMark to measure
direction. |
org.anchoranalysis.plugin.mpp.feature.bean.mark.radii |
Implementations of
FeatureMark to measure or
calculate radii. |
org.anchoranalysis.plugin.mpp.feature.bean.mark.region |
Implementations of
FeatureMark to measure
regions of Mark s. |
org.anchoranalysis.plugin.mpp.feature.bean.memo.all |
Implementations of
FeatureAllMemo . |
org.anchoranalysis.plugin.mpp.feature.bean.memo.ind |
Implementations of
FeatureSingleMemo . |
org.anchoranalysis.plugin.mpp.feature.bean.memo.pair |
Implementations of
FeaturePairMemo . |
org.anchoranalysis.plugin.mpp.feature.bean.memo.pair.distance |
Implementations of
FeaturePairMemo to
measure distance between Mark s. |
org.anchoranalysis.plugin.mpp.feature.bean.memo.pair.overlap |
Implementations of
FeaturePairMemo to
measure overlap between Mark s. |
org.anchoranalysis.plugin.mpp.feature.bean.unit |
Beans to convert between units.
|
org.anchoranalysis.plugin.mpp.feature.overlap |
Implementations of
CalculationPart to calculate
overlap between two entities. |
org.anchoranalysis.plugin.mpp.segment.bean.annealing |
Implementations of
AnnealScheme . |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.dependent.mark |
Implementations of
KernelBirth that are
dependent. |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent |
Implementations of
KernelBirth that are
independent. |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent.voxelized |
Implementations of
KernelBirth that are
independent but use the voxelized state of a Mark . |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.proposer |
Implementations of
KernelProposerOption . |
org.anchoranalysis.plugin.mpp.segment.bean.marks |
Beans to perform segmentation involving
Mark s and related
classes. |
org.anchoranalysis.plugin.mpp.segment.bean.marks.dual |
Implementations of
StateTransformerBean
involving DualVoxelizedMarks . |
org.anchoranalysis.plugin.mpp.segment.bean.marks.partition |
Implementations of
StateTransformerBean
involving MarksFromPartition . |
org.anchoranalysis.plugin.mpp.segment.bean.marks.voxelized |
Implementations of
StateTransformerBean
involving VoxelizedMarksWithEnergy . |
org.anchoranalysis.plugin.mpp.segment.bean.marks.weight |
Deriving a weight for a
Mark . |
org.anchoranalysis.plugin.mpp.segment.bean.optimization |
Beans related to performing optimization with marked-point-processes.
|
org.anchoranalysis.plugin.mpp.segment.bean.optimization.extract |
Implementations of
ExtractScoreSize . |
org.anchoranalysis.plugin.mpp.segment.bean.optimization.kernelbridge |
KernelStateBridge
and implementations. |
org.anchoranalysis.plugin.mpp.segment.bean.optimization.mode |
AssignMode and
implementations. |
org.anchoranalysis.plugin.mpp.segment.bean.optimization.reporter |
Implementations of
FeedbackReceiverBean . |
org.anchoranalysis.plugin.mpp.segment.bean.optimization.scheme |
Implementations of
OptimizationScheme . |
org.anchoranalysis.plugin.mpp.segment.bean.optimization.statereporter |
Implementations of
StateReporter . |
org.anchoranalysis.plugin.mpp.segment.bean.optimization.termination |
Implementations of
TerminationCondition . |
org.anchoranalysis.plugin.mpp.segment.kernel.assigner |
Implementations of
KernelAssigner . |
org.anchoranalysis.plugin.mpp.segment.kernel.updater |
KernelUpdater and implementations. |
org.anchoranalysis.plugin.mpp.segment.optimization |
Non-bean classes to help with optimization in
org.anchoranalysis.plugin.mpp.segment.bean.optimization and sub-packages. |
org.anchoranalysis.plugin.mpp.segment.shared |
Stared-state for segmentation tasks involving mark-point-processes.
|
org.anchoranalysis.plugin.onnx.bean.object.segment.decode.instance.maskrcnn |
Decodes the outputted tensors from a Mask
R-CNN implementation.
|
org.anchoranalysis.plugin.onnx.bean.object.segment.decode.instance.text |
Decodes the outputted tensors from text-segmentation models.
|
org.anchoranalysis.plugin.onnx.bean.object.segment.stack |
Segmenting a
Stack using the ONNX Runtime to produce
an ObjectCollection . |
org.anchoranalysis.plugin.onnx.model |
Non-bean classes for running an inference model with the ONNX
Runtime.
|
org.anchoranalysis.plugin.opencv |
Plugins that call OpenCV.
|
org.anchoranalysis.plugin.opencv.bean.color |
Operations involving color-spaces and OpenCV.
|
org.anchoranalysis.plugin.opencv.bean.feature |
Extracting features using OpenCV.
|
org.anchoranalysis.plugin.opencv.bean.interpolate |
Interpolation beans that use OpenCV.
|
org.anchoranalysis.plugin.opencv.bean.object.segment.stack |
Segmentation of a
Stack using OpenCV. |
org.anchoranalysis.plugin.opencv.bean.stack | |
org.anchoranalysis.plugin.opencv.convert |
Conversion to/from OpenCV data-structures.
|
org.anchoranalysis.plugin.opencv.resizer |
Interpolation non-beans that use OpenCV.
|
org.anchoranalysis.plugin.opencv.segment |
Non-bean classes pertaining to segmentation.
|
org.anchoranalysis.plugin.operator.feature.bean |
Features that combine or convert other features in a generic way.
|
org.anchoranalysis.plugin.operator.feature.bean.arithmetic |
Arithmetic involving features.
|
org.anchoranalysis.plugin.operator.feature.bean.conditional |
Conditional operations involving features.
|
org.anchoranalysis.plugin.operator.feature.bean.list |
Operations that extract a single value from a list of features.
|
org.anchoranalysis.plugin.operator.feature.bean.range |
Features that compare against a range of values.
|
org.anchoranalysis.plugin.operator.feature.bean.replace |
Replaces particular values if they are returned from a feature.
|
org.anchoranalysis.plugin.operator.feature.bean.statistics |
Converts feature values based upon a statistical measure of distribution.
|
org.anchoranalysis.plugin.operator.feature.physical |
Converting to/from physical units.
|
org.anchoranalysis.plugin.operator.feature.statistics |
Non-bean statistical operations.
|
org.anchoranalysis.plugin.points.bean |
Beans that fit or otherwise manipulate sets of points.
|
org.anchoranalysis.plugin.points.bean.convexhull |
Convex hull operations.
|
org.anchoranalysis.plugin.points.bean.feature |
Features related to points and fitting points to conics.
|
org.anchoranalysis.plugin.points.bean.fitter |
Fitting geometric structures to points.
|
org.anchoranalysis.plugin.points.calculate.ellipse |
CalculationPart related to fitting
ellipses to points by least-squares. |
org.anchoranalysis.plugin.points.calculate.ellipsoid |
CalculationPart related to fitting
ellipsoids to points by least-squares. |
org.anchoranalysis.plugin.points.convexhull |
Non-bean convex hull operations.
|
org.anchoranalysis.plugin.quick.bean.experiment |
Quickly defining experiments via several assumptions, including particular file-paths.
|
org.anchoranalysis.plugin.quick.bean.input |
Specifying inputs when quickly defining an experiment.
|
org.anchoranalysis.plugin.quick.bean.input.filepathappend |
Appending other entities to inputs when quickly defining experiments.
|
org.anchoranalysis.plugin.quick.bean.structure |
Specifying a structure of subdirectories and filenames when quickly defining an experiment.
|
org.anchoranalysis.spatial.axis |
Identifying the three standard axes in 3D cartesian coordinates.
|
org.anchoranalysis.spatial.box |
Axis-aligned bounding-boxes and related operations.
|
org.anchoranalysis.spatial.orientation |
Various methods to specify the orientation (general direction) of an entity.
|
org.anchoranalysis.spatial.point |
A cartesian-coordinate, across varying primitive types, in 2D and 3D space.
|
org.anchoranalysis.spatial.point.consumer |
Functional interfaces that accept cartesian coordinate points specified in different ways.
|
org.anchoranalysis.spatial.rtree |
R-Tree data structure and related operations.
|
org.anchoranalysis.spatial.scale |
How to much to scale an entity in Cartesian space by.
|
org.anchoranalysis.test |
Testing utilities and fixtures with no greater downstream dependency than anchor-core.
|
org.anchoranalysis.test.experiment |
Testing utilities and fixtures with no greater downstream dependency than
anchor-experiment or anchor-mpp or anchor-mpp-io.
|
org.anchoranalysis.test.experiment.launcher |
Launches an anchor binary from a shell and runs an experiment.
|
org.anchoranalysis.test.experiment.task |
Helper classes to execute
Task s in tests. |
org.anchoranalysis.test.feature |
Testing utilities and fixtures with no greater downstream dependency than anchor-feature.
|
org.anchoranalysis.test.feature.plugins |
Testing utilities and fixtures with no greater downstream dependency than
anchor-image-feature or anchor-mpp.
|
org.anchoranalysis.test.feature.plugins.mockfeature |
A mocked feature internally using a feature-calculation.
|
org.anchoranalysis.test.feature.plugins.objects |
Fixtures for creating object-masks and related feature-inputs.
|
org.anchoranalysis.test.image |
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
|
org.anchoranalysis.test.image.csv |
Comparing two CSV files for equality (by a certain definition).
|
org.anchoranalysis.test.image.io |
Utilities for testing-related reading and writing to the filesystem.
|
org.anchoranalysis.test.image.load |
Load test image data.
|
org.anchoranalysis.test.image.object |
Fixtures for creating object-masks.
|
org.anchoranalysis.test.image.rasterwriter.comparison |
Different ways for comparing images.
|
org.anchoranalysis.test.image.segment |
Fixtures or other helper classes for testing image segmentation algorithms.
|
org.anchoranalysis.test.image.stackwriter |
Fixtures for testing
StackWriter and
related classes. |
org.anchoranalysis.test.io.output |
Fixtures for an
OutputManager and related-classes. |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.