| org.anchoranalysis.annotation |
Ground truth for an image in diverse forms.
|
| org.anchoranalysis.annotation.image |
Annotations that apply to an image as a whole.
|
| org.anchoranalysis.annotation.io |
Reading and writing annotations to the filesystem.
|
| org.anchoranalysis.annotation.io.assignment |
A pairing of objects from two collections (bipartite matching).
|
| org.anchoranalysis.annotation.io.assignment.generator |
Generates output images to illustrate a Assignment between annotations. |
| org.anchoranalysis.annotation.io.bean |
Beans related to reading / writing / specifying annotations.
|
| org.anchoranalysis.annotation.io.bean.comparer |
What to compare an annotation (ground truth) against?
|
| org.anchoranalysis.annotation.io.image |
Reading and writing whole-image label annotations.
|
| org.anchoranalysis.annotation.io.image.findable |
The outcome of searching for annotations or images on the file-system.
|
| org.anchoranalysis.annotation.io.mark |
Reading and writing Mark-related annotations from/to the
file-system. |
| org.anchoranalysis.annotation.mark |
Annotations that use one or more marks to describe entities in an image.
|
| org.anchoranalysis.bean |
|
| org.anchoranalysis.bean.annotation |
|
| org.anchoranalysis.bean.define |
|
| org.anchoranalysis.bean.define.adder |
|
| org.anchoranalysis.bean.exception |
Exceptions that can occur executing generic operations on Anchor Beans. |
| org.anchoranalysis.bean.initializable |
Initializing beans with particular parameters, including recursively.
|
| org.anchoranalysis.bean.initializable.params |
Some kinds of parameters used when initializing beans.
|
| org.anchoranalysis.bean.initializable.property |
Performing initializion on particular properties in a bean.
|
| org.anchoranalysis.bean.permute |
Applying permutations to a bean's fields.
|
| org.anchoranalysis.bean.permute.property |
Applying permutations to the properties of a bean.
|
| org.anchoranalysis.bean.permute.setter |
Setter used to impose a permutation on bean properties.
|
| org.anchoranalysis.bean.provider |
A means of creating / loading / referencing a bean from another bean or class.
|
| org.anchoranalysis.bean.shared |
Utility beans which have a generally broader use than a specific module.
|
| org.anchoranalysis.bean.shared.color |
Beans that specify colors.
|
| org.anchoranalysis.bean.shared.color.scheme |
Beans that create lists or indices of colors according to particular schemes.
|
| org.anchoranalysis.bean.shared.dictionary |
Setting, referencing and initializing key-value parameters.
|
| org.anchoranalysis.bean.shared.path |
Defines a root path directory on the filesystem whre files are read / written.
|
| org.anchoranalysis.bean.shared.random |
Specifies a particular type of random-number generator.
|
| org.anchoranalysis.bean.shared.regex |
Specifies regular-expressions.
|
| org.anchoranalysis.bean.shared.relation |
Specifies a binary relation of some kind between scalars.
|
| org.anchoranalysis.bean.shared.relation.threshold |
Specifies a unary relation to a *threshold* value.
|
| org.anchoranalysis.bean.xml |
Reading Beans from XML files.
|
| org.anchoranalysis.bean.xml.exception |
Exceptions that can thrown when loading beans from XML.
|
| org.anchoranalysis.bean.xml.factory |
Custom factories for loading beans in custom ways from XML.
|
| org.anchoranalysis.browser.launcher |
Launching the anchor GUI interactive application from command-line.
|
| org.anchoranalysis.core.cache |
Caching (memozing) calls to a method so an operation does not need to be repeated.
|
| org.anchoranalysis.core.color |
Specifying particular colors and groups of colors.
|
| org.anchoranalysis.core.concurrency |
Specifying how many CPUs and GPUs can be allocated for some purpose.
|
| org.anchoranalysis.core.exception |
Very general exceptions and base classes for exceptions with wide applicability.
|
| org.anchoranalysis.core.exception.combinable |
Nested exceptions of similar type that can be combined together in a summary.
|
| org.anchoranalysis.core.exception.friendly |
Particular types of exceptions that are guaranteed to have a text/form that gives user-friendly
error descriptions.
|
| org.anchoranalysis.core.format |
File formats and associated extensions.
|
| org.anchoranalysis.core.functional |
Utilities and interfaces for applying functional-programming.
|
| org.anchoranalysis.core.functional.checked |
Versions of many functional-interfaces in java.util.function that throw
checked-exceptions.
|
| org.anchoranalysis.core.graph |
Data-structures for directed and undirected graphs, with or without an edge payload.
|
| org.anchoranalysis.core.identifier.getter |
Data structures for adding a unique name (a String or integer identifier) to other entities.
|
| org.anchoranalysis.core.identifier.name |
Data structures for name (String) and value associations.
|
| org.anchoranalysis.core.identifier.provider |
A collection of named-elements, a NamedProvider, and related operations. |
| org.anchoranalysis.core.identifier.provider.store |
Data structures like NamedProvider with
supporting for adding new elements. |
| org.anchoranalysis.core.index |
Classes to support getting/setting/specifying unique-integers (indices) for elements.
|
| org.anchoranalysis.core.index.bounded |
A range of elements with indiced, bounded to lie between particular a minimum and maximum.
|
| org.anchoranalysis.core.index.bounded.bridge |
|
| org.anchoranalysis.core.log |
Interfaces to log messages, both information and error messages.
|
| org.anchoranalysis.core.log.error |
Mechanism for reporting errors (exceptions/throwables) to the user.
|
| org.anchoranalysis.core.progress |
Classes to allow for tracking the progress of a task that can be broken into smaller units, for
reporting to the user.
|
| org.anchoranalysis.core.random |
Generating random numbers.
|
| org.anchoranalysis.core.serialize |
Utilities for serializing and deserializing objects.
|
| org.anchoranalysis.core.system |
Utilities for interacting with the operating system or computer system generally
|
| org.anchoranalysis.core.system.path |
Utilities for converting/manipulating file-paths.
|
| org.anchoranalysis.core.value |
Encapsulating values or sets of named-values.
|
| org.anchoranalysis.experiment |
Classes related to executing an experiment by calling jobs on inputs.
|
| org.anchoranalysis.experiment.arguments |
Arguments that can further specify an experiment in addition to its bean specification.
|
| org.anchoranalysis.experiment.bean |
Beans related to executing an experiment by calling jobs on inputs.
|
| org.anchoranalysis.experiment.bean.identifier |
Assigning unique names to experiments.
|
| org.anchoranalysis.experiment.bean.io |
Generic experiments that handle input and output in structured ways.
|
| org.anchoranalysis.experiment.bean.log |
Different approaches to where messages on the progress/status of an experiment are logged to.
|
| org.anchoranalysis.experiment.bean.processor |
How a task is executed on multiple inputs.
|
| org.anchoranalysis.experiment.bean.require |
A test whether certain conditions on arguments to experiments are fulfilled.
|
| org.anchoranalysis.experiment.bean.task |
Defines a task,
which is a set of operations run on an input, that may or may not generate an output. |
| org.anchoranalysis.experiment.io |
Interfaces for replacing attributes of an experiment: input, output, task etc.
|
| org.anchoranalysis.experiment.log |
Helpful classes for logging.
|
| org.anchoranalysis.experiment.task |
Non-bean classes related to a Task. |
| org.anchoranalysis.experiment.task.processor |
|
| org.anchoranalysis.feature.bean |
Beans pertaining to feature-calculation.
|
| org.anchoranalysis.feature.bean.list |
A feature-list (custom list type for features) and associated providers.
|
| org.anchoranalysis.feature.bean.operator |
Features that are sufficiently generic to work on any input-type.
|
| org.anchoranalysis.feature.bean.provider |
Provider of a single feature.
|
| org.anchoranalysis.feature.bean.results |
|
| org.anchoranalysis.feature.calculate |
Sub-feature units of calculation that can be cached.
|
| org.anchoranalysis.feature.calculate.cache |
Classes to cache feature-results or parts of feature-results that occur repeatedly among features
or across calculations of the same feature.
|
| org.anchoranalysis.feature.energy |
A particular stack used in feature-calculations called a EnergyStack together with related classes. |
| org.anchoranalysis.feature.input |
Base classes providing inputs to feature calculations.
|
| org.anchoranalysis.feature.io.csv |
Writing feature calculation-results in CSV format.
|
| org.anchoranalysis.feature.io.name |
Naming items in a weay that breaks down into multiple elements.
|
| org.anchoranalysis.feature.io.results |
Writes feature-calculation results in different formats, also grouped results.
|
| org.anchoranalysis.feature.io.results.group |
Various different outputs that can be written for the a grouped version of the results in ResultsWriter. |
| org.anchoranalysis.feature.name |
Data objects for the names of features.
|
| org.anchoranalysis.feature.results |
Results from one or more feature calculations.
|
| org.anchoranalysis.feature.session |
A defined context in which one or more features are provided inputs and produce results.
|
| org.anchoranalysis.feature.session.cache |
|
| org.anchoranalysis.feature.session.cache.finder |
Strategies to determine which child-cache (among hierarchy) to employ for a particular feature
calculation.
|
| org.anchoranalysis.feature.session.calculator.multi |
Calculates results for one or more features for a given input.
|
| org.anchoranalysis.feature.session.calculator.single |
Calculates results for a single feature for a given input.
|
| org.anchoranalysis.feature.session.replace |
Strategies on whether to reuse or invalidate a feature-input's cache.
|
| org.anchoranalysis.feature.shared |
Features shared for referencing among calculations.
|
| org.anchoranalysis.feature.store |
|
| org.anchoranalysis.image.bean |
Core (bean) classes for image processing.
|
| org.anchoranalysis.image.bean.channel.converter |
Base classes for comparing a channel to another type.
|
| org.anchoranalysis.image.bean.interpolator |
Beans for specifying image interpolators.
|
| org.anchoranalysis.image.bean.nonbean.error |
Specific exception types that can be thrown in this module.
|
| org.anchoranalysis.image.bean.nonbean.init |
Initialization of image-related beans.
|
| org.anchoranalysis.image.bean.nonbean.segment |
Non-bean classes relating to image-segmentation.
|
| org.anchoranalysis.image.bean.nonbean.spatial.arrange |
Non-beans to specify how to form a single-image by spatially combining other images.
|
| org.anchoranalysis.image.bean.object |
Beans pertaining to ObjectMask and their
collections. |
| org.anchoranalysis.image.bean.provider |
Base classes for providers of different core data entities related to images.
|
| org.anchoranalysis.image.bean.provider.stack |
|
| org.anchoranalysis.image.bean.segment |
Base classes to perform image segmentation, transforming an image into another meaningful entity
or entities.
|
| org.anchoranalysis.image.bean.segment.binary |
Base classes to perform binary-segmentation.
|
| org.anchoranalysis.image.bean.segment.object |
Base classes to segment a channel into objects.
|
| org.anchoranalysis.image.bean.spatial |
Beans to define entities or operate that consider Euclidian space.
|
| org.anchoranalysis.image.bean.spatial.arrange |
Beans to specify how to form a single-image by spatially combining other images.
|
| org.anchoranalysis.image.bean.spatial.direction |
Beans to specify a direction.
|
| org.anchoranalysis.image.bean.threshold |
Base classes for thresholding and calculating levels for thresholding.
|
| org.anchoranalysis.image.bean.threshold.relation |
Reusable relations to a threshold.
|
| org.anchoranalysis.image.bean.unitvalue.distance |
Converting quantities of distance between units.
|
| org.anchoranalysis.image.bean.unitvalue.extent |
Converting quantities of extent (area or volume) between units.
|
| org.anchoranalysis.image.bean.unitvalue.extent.area |
Converting quantities of area between units.
|
| org.anchoranalysis.image.bean.unitvalue.extent.volume |
Converting quantities of volume between units.
|
| org.anchoranalysis.image.core.bufferedimage |
|
| org.anchoranalysis.image.core.channel |
The Channel core data-class and related operations
and converters. |
| org.anchoranalysis.image.core.channel.convert |
Converts a channel to other data-types.
|
| org.anchoranalysis.image.core.channel.convert.attached |
Converts a channel to another data-type based upon another object to which it is attached.
|
| org.anchoranalysis.image.core.channel.convert.attached.channel |
Converts a channel to another data-type based upon a Channel to which it is attached. |
| org.anchoranalysis.image.core.channel.convert.attached.histogram |
Converts a channel to another data-type based upon a Histogram to which it is attached. |
| org.anchoranalysis.image.core.channel.factory |
Factory classes for creating Channel for various
voxel data-types. |
| org.anchoranalysis.image.core.dimensions |
Classes to describe the size of images or components of images both in voxels and physically.
|
| org.anchoranalysis.image.core.dimensions.size |
Determining or changing the size of an image.
|
| org.anchoranalysis.image.core.dimensions.size.suggestion |
Suggestions on a size for an image.
|
| org.anchoranalysis.image.core.mask |
An image with only two permissible states.
|
| org.anchoranalysis.image.core.mask.combine |
Binary operations involving voxelwise combination of Mask. |
| org.anchoranalysis.image.core.merge |
Merges two or more entities.
|
| org.anchoranalysis.image.core.object |
The key data entity org.anchoranalysis.image.voxel.object and related-classes and
operations.
|
| org.anchoranalysis.image.core.object.factory |
|
| org.anchoranalysis.image.core.object.label |
Labelling elements (object-masks or similar) with unique successive integers in a channel.
|
| org.anchoranalysis.image.core.object.properties |
|
| org.anchoranalysis.image.core.object.scale |
Scaling object-collections, or lists of elements with object-representations.
|
| org.anchoranalysis.image.core.object.seed |
Starting points for segmentation that are guaranteed to lie on one distinct object.
|
| org.anchoranalysis.image.core.orientation |
Various methods to specify the orientation (general direction) of an entity.
|
| org.anchoranalysis.image.core.outline |
Finds outline voxels, the pixels on the contour/edge of the object.
|
| org.anchoranalysis.image.core.outline.traverser |
Performs a walk on every voxel on the outline of an object-mask.
|
| org.anchoranalysis.image.core.outline.traverser.distance |
A list of visited pixels which forms one contiguous path where each voxel neighbors each other.
|
| org.anchoranalysis.image.core.outline.traverser.path |
A set of contiguously neighboring points along the outline of an object.
|
| org.anchoranalysis.image.core.outline.traverser.path.merge |
|
| org.anchoranalysis.image.core.outline.traverser.path.merge.strategy |
|
| org.anchoranalysis.image.core.points |
Operations that extract points from image data entities or vice versa.
|
| org.anchoranalysis.image.core.stack |
Defines the key data object, Stack, and related
classes. |
| org.anchoranalysis.image.core.stack.named |
A collection of Stacks, each with a unique identifier
as a name. |
| org.anchoranalysis.image.core.stack.time |
|
| org.anchoranalysis.image.feature.bean |
Beans pertaining to feature definition and calculation.
|
| org.anchoranalysis.image.feature.bean.evaluator |
Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
|
| org.anchoranalysis.image.feature.bean.histogram |
|
| org.anchoranalysis.image.feature.bean.object.collection |
|
| org.anchoranalysis.image.feature.bean.object.pair |
|
| org.anchoranalysis.image.feature.bean.object.single |
|
| org.anchoranalysis.image.feature.bean.physical |
Features that convert to/from physical spatial units (e.g.
|
| org.anchoranalysis.image.feature.calculation |
|
| org.anchoranalysis.image.feature.calculator |
Implementations of FeatureCalculatorMulti related to images,
especially to create tables of feature-calculations. |
| org.anchoranalysis.image.feature.calculator.merged |
A particular implementation of FeatureCalculatorMulti for
feature-calculations based upon pairs of image-objects. |
| org.anchoranalysis.image.feature.input |
|
| org.anchoranalysis.image.io |
Reading and writing of image-related data objects to and from the filesystem.
|
| org.anchoranalysis.image.io.bean.channel |
Beans pertaining to reading Channels as input. |
| org.anchoranalysis.image.io.bean.object.draw |
How to represent an object-mask in a raster that is being drawn.
|
| org.anchoranalysis.image.io.bean.object.feature |
|
| org.anchoranalysis.image.io.bean.stack.combine |
Beans to combine multiple stacks into a single stack before outputting.
|
| org.anchoranalysis.image.io.bean.stack.reader |
Bean classes for reading raster-files from the filesystem.
|
| org.anchoranalysis.image.io.bean.stack.writer |
Bean classes for writing raster-files to the filesystem.
|
| org.anchoranalysis.image.io.channel.input |
Non-bean classes for reading a Channel from the
filesystem. |
| org.anchoranalysis.image.io.channel.input.series |
Non-bean classes for reading a series of Channels from the filesystem. |
| org.anchoranalysis.image.io.channel.output |
Non-bean classes for writing a Channel to the
filesystem. |
| org.anchoranalysis.image.io.histogram.input |
Non-bean classes for reading a Histogram from the
filesystem. |
| org.anchoranalysis.image.io.histogram.output |
Non-bean classes for writing a Histogram to the
filesystem. |
| org.anchoranalysis.image.io.object |
Non-bean classes for reading / writing an ObjectCollection from and to the filesystem. |
| org.anchoranalysis.image.io.object.input |
|
| org.anchoranalysis.image.io.object.output.grayscale |
|
| org.anchoranalysis.image.io.object.output.hdf5 |
|
| org.anchoranalysis.image.io.object.output.mask |
Writing an ObjectCollection to the filesystem as
multiple binary singled-channeled images. |
| org.anchoranalysis.image.io.object.output.rgb |
|
| org.anchoranalysis.image.io.stack |
Non-bean classes for reading / writing a Stack from
and to the filesystem. |
| org.anchoranalysis.image.io.stack.input |
Non-bean classes for reading a Stack from the
filesystem. |
| org.anchoranalysis.image.io.stack.output |
Non-bean classes for writing a Stack to the
filesystem. |
| org.anchoranalysis.image.io.stack.output.box |
Base classes for generators that ultimately write only a bounding-box portion of a Stack to the filesystem. |
| org.anchoranalysis.image.io.stack.output.generator |
Base classes for generators that ultimately write a Stack to the filesystem. |
| org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
| org.anchoranalysis.image.voxel.arithmetic |
Arithmetic operations for Voxels. |
| org.anchoranalysis.image.voxel.assigner |
Assigns values to some or all voxels.
|
| org.anchoranalysis.image.voxel.binary |
|
| org.anchoranalysis.image.voxel.binary.connected |
|
| org.anchoranalysis.image.voxel.binary.values |
Defining on and off intensity-values to interpret an image in a binary way.
|
| org.anchoranalysis.image.voxel.buffer |
A buffer of voxel-values, usually corresponding to a single z-slice in Voxels. |
| org.anchoranalysis.image.voxel.buffer.max |
|
| org.anchoranalysis.image.voxel.buffer.mean |
Buffer for performing a mean intensity projection.
|
| org.anchoranalysis.image.voxel.buffer.primitive |
Conversion of both primitive data types and image structures between Anchor's data-structures and
other representations.
|
| org.anchoranalysis.image.voxel.buffer.slice |
A container with voxel-buffers for each z-slice.
|
| org.anchoranalysis.image.voxel.convert |
Converting Voxels to different data-types. |
| org.anchoranalysis.image.voxel.convert.imglib2 |
Converts anchor data-structures to those used by ImgLib2. |
| org.anchoranalysis.image.voxel.datatype |
The different data-types that can be used to represent voxels.
|
| org.anchoranalysis.image.voxel.extracter |
Methods to read/copy/duplicate portions of voxels.
|
| org.anchoranalysis.image.voxel.extracter.predicate |
Methods to find or count voxels that satisfy a predicate.
|
| org.anchoranalysis.image.voxel.factory |
|
| org.anchoranalysis.image.voxel.interpolator |
Different interpolator methods to use when scaling voxels.
|
| org.anchoranalysis.image.voxel.iterator |
Utilities to iterate over voxel-locations in images and sub-regions of images.
|
| org.anchoranalysis.image.voxel.iterator.intersecting |
Like org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over
the intersecting regions of two entities.
|
| org.anchoranalysis.image.voxel.iterator.neighbor |
Iterating over a point's neighboring voxels.
|
| org.anchoranalysis.image.voxel.iterator.neighbor.kernel |
|
| org.anchoranalysis.image.voxel.iterator.predicate |
Functional-interfaces for processing different combinations of points and buffers that return a
boolean.
|
| org.anchoranalysis.image.voxel.iterator.process |
Functional-interfaces for processing different combinations of points and buffers that do not
return a value.
|
| org.anchoranalysis.image.voxel.iterator.process.buffer |
Functional-interfaces for processing different combinations of points and raw buffers, but not
VoxelBuffer. |
| org.anchoranalysis.image.voxel.iterator.process.voxelbuffer |
Functional-interfaces for processing different combinations of points and VoxelBuffer but not raw buffers. |
| org.anchoranalysis.image.voxel.kernel |
Applying a kernel via
convolution to voxels. |
| org.anchoranalysis.image.voxel.kernel.count |
Kernels to count the number of voxels that are equal to a particular value.
|
| org.anchoranalysis.image.voxel.kernel.morphological |
Kernels that apply morphological operations.
|
| org.anchoranalysis.image.voxel.kernel.outline |
Kernel to find outline voxels on an object.
|
| org.anchoranalysis.image.voxel.neighborhood |
A region in proximity to a voxel, encompassing this voxel as well as others.
|
| org.anchoranalysis.image.voxel.object |
The fundamental data class that is an ObjectMask
and related structures. |
| org.anchoranalysis.image.voxel.object.morphological |
|
| org.anchoranalysis.image.voxel.object.morphological.predicate |
Predicates to match certain voxels as used in org.anchoranalysis.image.voxel.object.morphological.
|
| org.anchoranalysis.image.voxel.statistics |
Statistics about aggregated voxel intensities.
|
| org.anchoranalysis.image.voxel.thresholder |
Thresholding operations on voxels.
|
| org.anchoranalysis.io.bioformats |
Non-bean classes for filesystem I/O using Bioformats. |
| org.anchoranalysis.io.bioformats.bean |
|
| org.anchoranalysis.io.bioformats.bean.options |
User-specified options that can modify metadata or other attributes of a loaded Bioformats image.
|
| org.anchoranalysis.io.bioformats.bean.writer |
Writing stacks to the file system using the Bioformats library.
|
| org.anchoranalysis.io.bioformats.copyconvert |
Converts the byte stream opened by Bioformats into channels of particular data-type.
|
| org.anchoranalysis.io.bioformats.copyconvert.tobyte |
Converts the byte stream opened by Bioformats into channels of ByteBuffer. |
| org.anchoranalysis.io.bioformats.copyconvert.tofloat |
Converts the byte stream opened by Bioformats into channels of FloatBuffer. |
| org.anchoranalysis.io.bioformats.copyconvert.toint |
Converts the byte stream opened by Bioformats into channels of IntBuffer. |
| org.anchoranalysis.io.bioformats.copyconvert.toshort |
Converts the byte stream opened by Bioformats into channels of ShortBuffer. |
| org.anchoranalysis.io.generator |
Base-classes and utilities for generators, which write different types of objects to the file
system.
|
| org.anchoranalysis.io.generator.collection |
Outputting more than one element collectively using a generator.
|
| org.anchoranalysis.io.generator.combined |
Combining multiple generators into one.
|
| org.anchoranalysis.io.generator.sequence |
Writing a sequence of elements using a generator.
|
| org.anchoranalysis.io.generator.sequence.pattern |
A particular naming pattern files follow when outputted.
|
| org.anchoranalysis.io.generator.serialized |
Generators for writing serialized objects.
|
| org.anchoranalysis.io.generator.tabular |
Generators for writing tabular data, including CSV.
|
| org.anchoranalysis.io.generator.text |
Generators for writing textual data, including strings.
|
| org.anchoranalysis.io.generator.xml |
Generators for writing XML data.
|
| org.anchoranalysis.io.imagej.bean.stack.writer |
Raster-writers that use ImageJ to write images to the filesystem.
|
| org.anchoranalysis.io.imagej.convert |
Converts to and from ImageJ data-structures for images.
|
| org.anchoranalysis.io.input |
Classes relating to creating inputs for an experiment / task.
|
| org.anchoranalysis.io.input.bean |
Beans related to collecting inputs from the file-system for an experiment.
|
| org.anchoranalysis.io.input.bean.descriptivename |
Beans to derive names (compact unique identifiers) from files.
|
| org.anchoranalysis.io.input.bean.dictionary |
|
| org.anchoranalysis.io.input.bean.files |
Methods to provide a collection of Files. |
| org.anchoranalysis.io.input.bean.path |
Beans pertaining to manipulating and matching against file-paths.
|
| org.anchoranalysis.io.input.bean.path.matcher |
Beans to find a subset of files that match a particular conditions on their paths.
|
| org.anchoranalysis.io.input.bean.path.provider |
Methods to provide a single file-path.
|
| org.anchoranalysis.io.input.csv |
Classes for reading comma-separated-values (CSV) files.
|
| org.anchoranalysis.io.input.files |
Non-bean classes that relate to using files during inputting.
|
| org.anchoranalysis.io.input.path |
Non-bean classes pertaining to getting/extracting/manipulating paths as used in inputting.
|
| org.anchoranalysis.io.input.path.matcher |
Non-bean classes to help with org.anchoranalysis.io.input.bean.path.matcher.
|
| org.anchoranalysis.io.manifest |
A manifest that records what outputs occur and where they occur.
|
| org.anchoranalysis.io.manifest.deserializer |
Classes to read manifests from the file-system.
|
| org.anchoranalysis.io.manifest.directory |
Entities to indicate a directory in the manifest.
|
| org.anchoranalysis.io.manifest.directory.sequenced |
Classes related to a directory that has a particular sequence of outputted filenames.
|
| org.anchoranalysis.io.manifest.file |
Entities to indicate a file and its role in the manifest.
|
| org.anchoranalysis.io.manifest.finder |
Methods to search through a manifest-file to find outputs matching certain conditions.
|
| org.anchoranalysis.io.manifest.finder.match |
Predicates that are useful for matching against particular type of objects in finders.
|
| org.anchoranalysis.io.manifest.operationrecorder |
Makes a record of each file/subdirectory written as output.
|
| org.anchoranalysis.io.manifest.sequencetype |
Predictable patterns of indexes as used in sets of outputted files.
|
| org.anchoranalysis.io.output.bean |
Beans for the framework around writing files to the file-system.
|
| org.anchoranalysis.io.output.bean.enabled |
Beans indicating whether a particular output is enabled or not.
|
| org.anchoranalysis.io.output.bean.path.prefixer |
Beans for generating paths for outputting files by adding a prefix, suffix etc.
|
| org.anchoranalysis.io.output.bean.rules |
Rules for determining if a particular output is enabled or not in a context of a hierarchy.
|
| org.anchoranalysis.io.output.enabled |
Non-beans pertaining to whether a particular output is enabled or not.
|
| org.anchoranalysis.io.output.enabled.multi |
Non-beans that pertain to whether multiple-levels have outputs that are enabled or not.
|
| org.anchoranalysis.io.output.enabled.single |
Non-beans that pertain to whether a single level has outputs that are enabled or not.
|
| org.anchoranalysis.io.output.error |
Exceptions that may be thrown when writing files to the file-system.
|
| org.anchoranalysis.io.output.namestyle |
Methods of naming a file with an index in the file-name.
|
| org.anchoranalysis.io.output.outputter |
Classes for outputting to particular directories.
|
| org.anchoranalysis.io.output.outputter.directory |
BoundDirectory and related classes.
|
| org.anchoranalysis.io.output.path.prefixer |
Non-beans for generating paths for outputting files by adding a prefix, suffix etc.
|
| org.anchoranalysis.io.output.recorded |
Classes for recording the output-names used as they are written / queried.
|
| org.anchoranalysis.io.output.writer |
Allows a generators to write element(s) to the filesystem.
|
| org.anchoranalysis.io.output.xml |
Outputting XML to the file-system.
|
| org.anchoranalysis.launcher |
Parent package and entry-point classes for the Anchor command-line launcher application.
|
| org.anchoranalysis.launcher.config |
Specifies a configuration of the launcher for a particular application.
|
| org.anchoranalysis.launcher.executor |
Runs a particular experiment after identifying necessary paths and input files.
|
| org.anchoranalysis.launcher.executor.selectparam |
Different methods of selecting a object T that is used as a parameter for an experiment.
|
| org.anchoranalysis.launcher.executor.selectparam.experiment |
|
| org.anchoranalysis.launcher.executor.selectparam.path |
SelectParams for loading a Optional<Path> for inputs, outputs or tasks. |
| org.anchoranalysis.launcher.executor.selectparam.path.convert |
Converting paths to/from different formats as needed by org.anchoranalysis.launcher.executor.selectparam.path.
|
| org.anchoranalysis.launcher.options |
A centralized location for all command-line options used by the launcher.
|
| org.anchoranalysis.launcher.options.outputs |
Adding/removing/changing the output(s) from the experiment via command-line-options.
|
| org.anchoranalysis.launcher.resources |
Reading and integrating resources for the launcher.
|
| org.anchoranalysis.launcher.run |
Parses command-line arguments and runs an experiment.
|
| org.anchoranalysis.launcher.run.tasks |
Loading and displaying pre-defined tasks.
|
| org.anchoranalysis.math.arithmetic |
Performing primitive type conversion, counting and summing.
|
| org.anchoranalysis.math.equation |
Solving or manipulating equations.
|
| org.anchoranalysis.math.histogram |
The Histogram data class and related operations. |
| org.anchoranalysis.math.optimization |
|
| org.anchoranalysis.math.relation |
Different kinds of binary-relations.
|
| org.anchoranalysis.math.statistics |
Data structures and algorithms to calculate statistics.
|
| org.anchoranalysis.math.statistics.moment |
Calculates first and second image
moments from a covariance matrix of points. |
| org.anchoranalysis.mpp.bean |
|
| org.anchoranalysis.mpp.bean.anneal |
|
| org.anchoranalysis.mpp.bean.bound |
|
| org.anchoranalysis.mpp.bean.init |
|
| org.anchoranalysis.mpp.bean.mark |
|
| org.anchoranalysis.mpp.bean.mark.bounds |
|
| org.anchoranalysis.mpp.bean.mark.factory |
|
| org.anchoranalysis.mpp.bean.points |
|
| org.anchoranalysis.mpp.bean.points.fitter |
|
| org.anchoranalysis.mpp.bean.points.updatable |
|
| org.anchoranalysis.mpp.bean.proposer |
|
| org.anchoranalysis.mpp.bean.proposer.radii |
|
| org.anchoranalysis.mpp.bean.provider |
|
| org.anchoranalysis.mpp.bean.regionmap |
|
| org.anchoranalysis.mpp.bound |
|
| org.anchoranalysis.mpp.feature.addcriteria |
|
| org.anchoranalysis.mpp.feature.bean.energy.element |
|
| org.anchoranalysis.mpp.feature.bean.energy.scheme |
|
| org.anchoranalysis.mpp.feature.bean.mark |
|
| org.anchoranalysis.mpp.feature.bean.mark.collection |
|
| org.anchoranalysis.mpp.feature.energy |
|
| org.anchoranalysis.mpp.feature.energy.marks |
|
| org.anchoranalysis.mpp.feature.energy.saved |
|
| org.anchoranalysis.mpp.feature.energy.scheme |
|
| org.anchoranalysis.mpp.feature.error |
|
| org.anchoranalysis.mpp.feature.input.memo |
|
| org.anchoranalysis.mpp.feature.mark |
|
| org.anchoranalysis.mpp.io.bean.input |
|
| org.anchoranalysis.mpp.io.bean.report.feature |
|
| org.anchoranalysis.mpp.io.input |
|
| org.anchoranalysis.mpp.io.marks |
|
| org.anchoranalysis.mpp.io.marks.generator |
|
| org.anchoranalysis.mpp.io.output |
|
| org.anchoranalysis.mpp.mark |
|
| org.anchoranalysis.mpp.mark.conic |
|
| org.anchoranalysis.mpp.mark.points |
|
| org.anchoranalysis.mpp.mark.set |
|
| org.anchoranalysis.mpp.mark.voxelized |
|
| org.anchoranalysis.mpp.mark.voxelized.memo |
|
| org.anchoranalysis.mpp.overlap |
|
| org.anchoranalysis.mpp.overlay |
|
| org.anchoranalysis.mpp.pair |
|
| org.anchoranalysis.mpp.points |
|
| org.anchoranalysis.mpp.probmap |
|
| org.anchoranalysis.mpp.proposer |
|
| org.anchoranalysis.mpp.proposer.error |
|
| org.anchoranalysis.mpp.proposer.visualization |
|
| org.anchoranalysis.mpp.segment.bean |
Beans for segmentation algorithms related to marked-point-processes.
|
| org.anchoranalysis.mpp.segment.bean.define |
|
| org.anchoranalysis.mpp.segment.bean.kernel |
Base classes for kernels that transition a configuration of marks (a MarkCollection) into an altered version. |
| org.anchoranalysis.mpp.segment.bean.kernel.proposer |
|
| org.anchoranalysis.mpp.segment.bean.optimization |
|
| org.anchoranalysis.mpp.segment.bean.optimization.feedback |
|
| org.anchoranalysis.mpp.segment.bean.optimization.termination |
|
| org.anchoranalysis.mpp.segment.define |
|
| org.anchoranalysis.mpp.segment.kernel |
|
| org.anchoranalysis.mpp.segment.kernel.proposer |
|
| org.anchoranalysis.mpp.segment.optimization |
|
| org.anchoranalysis.mpp.segment.optimization.feedback |
|
| org.anchoranalysis.mpp.segment.optimization.feedback.aggregate |
|
| org.anchoranalysis.mpp.segment.optimization.feedback.period |
|
| org.anchoranalysis.mpp.segment.optimization.step |
|
| org.anchoranalysis.mpp.segment.transformer |
|
| org.anchoranalysis.mpp.voxel.partition |
|
| org.anchoranalysis.mpp.voxel.partition.factory |
|
| org.anchoranalysis.overlay |
Overlays and related classes involving drawing entities on top
of an image. |
| org.anchoranalysis.overlay.bean |
Beans relating to drawing an Overlay on an image. |
| org.anchoranalysis.overlay.collection |
|
| org.anchoranalysis.overlay.identifier |
|
| org.anchoranalysis.overlay.object |
|
| org.anchoranalysis.overlay.object.scaled |
Creates a scaled version of ObjectMask to use as an
overlay. |
| org.anchoranalysis.overlay.writer |
Drawing an overlay on an image.
|
| org.anchoranalysis.plot |
Plotting data on charts.
|
| org.anchoranalysis.plot.bean |
Beans for plotting.
|
| org.anchoranalysis.plot.bean.colorscheme |
Color schemes associated with plots.
|
| org.anchoranalysis.plot.index |
Non-bean plot definitions.
|
| org.anchoranalysis.plugin.annotation.bean.aggregate |
Beans to combine two or more annotations.
|
| org.anchoranalysis.plugin.annotation.bean.comparer |
Comparing the similarity of annotations from two images to each other.
|
| org.anchoranalysis.plugin.annotation.bean.comparison |
Task to compare a set of annotations to a segmentation or another set of annotations.
|
| org.anchoranalysis.plugin.annotation.bean.comparison.assigner |
Pairs annotations from two different sets, creating an assignment of some type.
|
| org.anchoranalysis.plugin.annotation.bean.file |
|
| org.anchoranalysis.plugin.annotation.bean.label |
A label as used for annotating.
|
| org.anchoranalysis.plugin.annotation.bean.strategy |
Strategies for how to annotate an image, such label per image etc.
|
| org.anchoranalysis.plugin.annotation.comparison |
Non-bean classes for comparing two sets of annotations.
|
| org.anchoranalysis.plugin.fiji.bean.channel.grayscalereconstruction |
Morphological grayscale-reconstruction algorithm.
|
| org.anchoranalysis.plugin.fiji.bean.channel.provider |
|
| org.anchoranalysis.plugin.fiji.bean.channel.provider.distance |
|
| org.anchoranalysis.plugin.fiji.bean.define |
|
| org.anchoranalysis.plugin.fiji.bean.mask.provider |
|
| org.anchoranalysis.plugin.fiji.bean.threshold |
|
| org.anchoranalysis.plugin.image.bean.blur |
Filters that perform blurring.
|
| org.anchoranalysis.plugin.image.bean.box |
Bounding box manipulation.
|
| org.anchoranalysis.plugin.image.bean.channel.convert |
|
| org.anchoranalysis.plugin.image.bean.channel.convert.histogram |
|
| org.anchoranalysis.plugin.image.bean.channel.provider |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.assign |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.convert |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.gradient |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.intensity |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.mask |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.object |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.score |
|
| org.anchoranalysis.plugin.image.bean.channel.provider.slice |
|
| org.anchoranalysis.plugin.image.bean.color.provider |
|
| org.anchoranalysis.plugin.image.bean.dimensions.provider |
|
| org.anchoranalysis.plugin.image.bean.histogram.provider |
|
| org.anchoranalysis.plugin.image.bean.histogram.threshold |
|
| org.anchoranalysis.plugin.image.bean.mask.provider |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.combine |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.convert |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.dimensions |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.morphological |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.predicate |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.resize |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.segment |
|
| org.anchoranalysis.plugin.image.bean.mask.provider.slice |
|
| org.anchoranalysis.plugin.image.bean.object.filter |
|
| org.anchoranalysis.plugin.image.bean.object.filter.combine |
|
| org.anchoranalysis.plugin.image.bean.object.filter.dependent |
|
| org.anchoranalysis.plugin.image.bean.object.filter.independent |
|
| org.anchoranalysis.plugin.image.bean.object.match |
|
| org.anchoranalysis.plugin.image.bean.object.provider |
|
| org.anchoranalysis.plugin.image.bean.object.provider.connected |
|
| org.anchoranalysis.plugin.image.bean.object.provider.feature |
|
| org.anchoranalysis.plugin.image.bean.object.provider.filter |
|
| org.anchoranalysis.plugin.image.bean.object.provider.mask |
|
| org.anchoranalysis.plugin.image.bean.object.provider.merge |
|
| org.anchoranalysis.plugin.image.bean.object.provider.morphological |
|
| org.anchoranalysis.plugin.image.bean.object.provider.segment |
|
| org.anchoranalysis.plugin.image.bean.object.provider.slice |
|
| org.anchoranalysis.plugin.image.bean.object.provider.split |
|
| org.anchoranalysis.plugin.image.bean.object.segment.channel |
|
| org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.minima |
|
| org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.minima.grayscalereconstruction |
|
| org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong |
|
| org.anchoranalysis.plugin.image.bean.object.segment.reduce |
Strategies for reducing the number of elements with a list by merging/removing lower-confidence
elements that overlap.
|
| org.anchoranalysis.plugin.image.bean.object.segment.stack |
Instance-segmentation of a Stack. |
| org.anchoranalysis.plugin.image.bean.params |
|
| org.anchoranalysis.plugin.image.bean.scale |
Implementations of ScaleCalculator for calculating
a scaling-factor from dimensions. |
| org.anchoranalysis.plugin.image.bean.segment.binary |
|
| org.anchoranalysis.plugin.image.bean.stack.provider |
|
| org.anchoranalysis.plugin.image.bean.stack.provider.color |
|
| org.anchoranalysis.plugin.image.bean.stack.provider.plot |
|
| org.anchoranalysis.plugin.image.bean.thumbnail.object |
|
| org.anchoranalysis.plugin.image.bean.thumbnail.stack |
|
| org.anchoranalysis.plugin.image.box |
Non-beans pertaining to bounding-boxes.
|
| org.anchoranalysis.plugin.image.channel |
|
| org.anchoranalysis.plugin.image.feature.bean.dimensions |
|
| org.anchoranalysis.plugin.image.feature.bean.histogram.statistic |
|
| org.anchoranalysis.plugin.image.feature.bean.histogram.threshold |
|
| org.anchoranalysis.plugin.image.feature.bean.list.pair |
|
| org.anchoranalysis.plugin.image.feature.bean.list.permute |
|
| org.anchoranalysis.plugin.image.feature.bean.morphological |
|
| org.anchoranalysis.plugin.image.feature.bean.object.collection |
|
| org.anchoranalysis.plugin.image.feature.bean.object.combine |
|
| org.anchoranalysis.plugin.image.feature.bean.object.pair |
|
| org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap |
|
| org.anchoranalysis.plugin.image.feature.bean.object.pair.touching |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.border |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.energy |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.intensity |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.moments |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.morphological |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.shape |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.shared |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.slice |
|
| org.anchoranalysis.plugin.image.feature.bean.object.single.surface |
|
| org.anchoranalysis.plugin.image.feature.bean.physical |
|
| org.anchoranalysis.plugin.image.feature.bean.score |
|
| org.anchoranalysis.plugin.image.feature.bean.shared |
|
| org.anchoranalysis.plugin.image.feature.bean.shared.object |
|
| org.anchoranalysis.plugin.image.feature.bean.stack.intensity |
|
| org.anchoranalysis.plugin.image.feature.bean.stack.object |
|
| org.anchoranalysis.plugin.image.feature.object |
|
| org.anchoranalysis.plugin.image.feature.object.calculation.delegate |
|
| org.anchoranalysis.plugin.image.feature.object.calculation.single |
|
| org.anchoranalysis.plugin.image.feature.object.calculation.single.morphological |
|
| org.anchoranalysis.plugin.image.feature.stack.calculation |
|
| org.anchoranalysis.plugin.image.intensity |
|
| org.anchoranalysis.plugin.image.intensity.level |
|
| org.anchoranalysis.plugin.image.object |
|
| org.anchoranalysis.plugin.image.object.merge |
|
| org.anchoranalysis.plugin.image.object.merge.condition |
|
| org.anchoranalysis.plugin.image.object.merge.priority |
|
| org.anchoranalysis.plugin.image.provider |
|
| org.anchoranalysis.plugin.image.segment |
|
| org.anchoranalysis.plugin.image.segment.thresholder.slice |
|
| org.anchoranalysis.plugin.image.segment.watershed.encoding |
|
| org.anchoranalysis.plugin.image.task.bean |
A parent package for many different kinds of tasks.
|
| org.anchoranalysis.plugin.image.task.bean.feature |
|
| org.anchoranalysis.plugin.image.task.bean.feature.source |
Source of rows in feature-tables with FeatureSource and derived classes. |
| org.anchoranalysis.plugin.image.task.bean.format |
Tasks for converting image-formats.
|
| org.anchoranalysis.plugin.image.task.bean.format.convertstyle |
Different approaches for converting sets of channels (RGB, independently etc.) to another image
format.
|
| org.anchoranalysis.plugin.image.task.bean.grouped |
Tasks that involved stacks (usually each channel from an image) that are somehow
grouped-together.
|
| org.anchoranalysis.plugin.image.task.bean.grouped.histogram |
Task(s) to export histograms of intensity values.
|
| org.anchoranalysis.plugin.image.task.bean.grouped.raster |
Task(s) to calculate the mean of channels grouped together.
|
| org.anchoranalysis.plugin.image.task.bean.grouped.selectchannels |
Selecting a subset of a set of channels.
|
| org.anchoranalysis.plugin.image.task.bean.labeller |
Associating labels with images.
|
| org.anchoranalysis.plugin.image.task.bean.scale |
Tasks to scale an image.
|
| org.anchoranalysis.plugin.image.task.bean.segment |
Tasks to segment an image.
|
| org.anchoranalysis.plugin.image.task.bean.slice |
Tasks that process on one or more slices from a z-stack.
|
| org.anchoranalysis.plugin.image.task.feature |
Non-bean classes pertaining to Features as used in tasks. |
| org.anchoranalysis.plugin.image.task.feature.calculator |
Non-beans for calculating Features. |
| org.anchoranalysis.plugin.image.task.grouped |
Non-bean classes about grouping channels or other inputs.
|
| org.anchoranalysis.plugin.image.task.labeller |
Non-bean classes about labelling images.
|
| org.anchoranalysis.plugin.image.task.segment |
Non-bean classes for image-segmentation.
|
| org.anchoranalysis.plugin.image.task.stack |
Non-bean classes pertaining to stacks and channels as used in tasks.
|
| org.anchoranalysis.plugin.image.thumbnail |
Non-bean classes for thumbnail creation.
|
| org.anchoranalysis.plugin.imagej.bean.channel.provider |
|
| org.anchoranalysis.plugin.imagej.bean.channel.provider.filter |
|
| org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments |
|
| org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank |
|
| org.anchoranalysis.plugin.imagej.bean.define |
|
| org.anchoranalysis.plugin.imagej.bean.interpolator |
|
| org.anchoranalysis.plugin.imagej.bean.mask.provider |
|
| org.anchoranalysis.plugin.imagej.bean.object.provider |
|
| org.anchoranalysis.plugin.imagej.bean.object.segment |
|
| org.anchoranalysis.plugin.imagej.bean.stack.provider |
|
| org.anchoranalysis.plugin.imagej.bean.threshold |
|
| org.anchoranalysis.plugin.imagej.channel.provider |
|
| org.anchoranalysis.plugin.imagej.mask |
|
| org.anchoranalysis.plugin.io.bean.channel.map |
|
| org.anchoranalysis.plugin.io.bean.copyfilesmode.copymethod |
|
| org.anchoranalysis.plugin.io.bean.copyfilesmode.naming |
|
| org.anchoranalysis.plugin.io.bean.descriptivename |
|
| org.anchoranalysis.plugin.io.bean.descriptivename.patternspan |
|
| org.anchoranalysis.plugin.io.bean.filepath |
|
| org.anchoranalysis.plugin.io.bean.filepath.prefixer |
|
| org.anchoranalysis.plugin.io.bean.groupfiles |
|
| org.anchoranalysis.plugin.io.bean.groupfiles.check |
|
| org.anchoranalysis.plugin.io.bean.groupfiles.parser |
|
| org.anchoranalysis.plugin.io.bean.input |
|
| org.anchoranalysis.plugin.io.bean.input.channel |
|
| org.anchoranalysis.plugin.io.bean.input.files |
|
| org.anchoranalysis.plugin.io.bean.input.files.provider |
|
| org.anchoranalysis.plugin.io.bean.input.filter |
|
| org.anchoranalysis.plugin.io.bean.input.manifest |
|
| org.anchoranalysis.plugin.io.bean.input.stack |
|
| org.anchoranalysis.plugin.io.bean.path.derive |
|
| org.anchoranalysis.plugin.io.bean.provider.file |
|
| org.anchoranalysis.plugin.io.bean.stack.reader |
|
| org.anchoranalysis.plugin.io.bean.stack.writer |
|
| org.anchoranalysis.plugin.io.bean.summarizer |
|
| org.anchoranalysis.plugin.io.bean.summarizer.image |
|
| org.anchoranalysis.plugin.io.bean.summarizer.input |
|
| org.anchoranalysis.plugin.io.bean.summarizer.path |
|
| org.anchoranalysis.plugin.io.bean.task |
|
| org.anchoranalysis.plugin.io.input.filter |
|
| org.anchoranalysis.plugin.io.input.path |
|
| org.anchoranalysis.plugin.io.manifest |
|
| org.anchoranalysis.plugin.io.multifile |
|
| org.anchoranalysis.plugin.io.multifile.buffer |
|
| org.anchoranalysis.plugin.io.shared |
Objects used in shared-state in tasks.
|
| org.anchoranalysis.plugin.io.xml |
Reading and writing metadata XML.
|
| org.anchoranalysis.plugin.ml.bean.classifier |
Beans that perform classification in some way.
|
| org.anchoranalysis.plugin.ml.bean.cluster |
Beans that perform clustering in some way.
|
| org.anchoranalysis.plugin.mpp.bean.addcriteria |
|
| org.anchoranalysis.plugin.mpp.bean.bound |
|
| org.anchoranalysis.plugin.mpp.bean.check |
|
| org.anchoranalysis.plugin.mpp.bean.define |
|
| org.anchoranalysis.plugin.mpp.bean.distance |
|
| org.anchoranalysis.plugin.mpp.bean.object.provider |
|
| org.anchoranalysis.plugin.mpp.bean.outline |
|
| org.anchoranalysis.plugin.mpp.bean.outline.visitscheduler |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.mark.collection |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.mark.single |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.mark.single.fromcollection |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.merge |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.orientation |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.points |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.points.fromorientation |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.points.onoutline |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.position |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.radii |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.scalar |
|
| org.anchoranalysis.plugin.mpp.bean.proposer.split |
|
| org.anchoranalysis.plugin.mpp.bean.provider.collection |
|
| org.anchoranalysis.plugin.mpp.bean.provider.single |
|
| org.anchoranalysis.plugin.mpp.bean.region |
|
| org.anchoranalysis.plugin.mpp.bean.segment.binary |
|
| org.anchoranalysis.plugin.mpp.bean.stack.provider |
|
| org.anchoranalysis.plugin.mpp.experiment |
|
| org.anchoranalysis.plugin.mpp.experiment.bean |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.define |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.feature |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.feature.report |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.feature.report.task |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.feature.source |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.objects |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.objects.columndefinition |
|
| org.anchoranalysis.plugin.mpp.experiment.bean.segment |
|
| org.anchoranalysis.plugin.mpp.experiment.objects |
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| org.anchoranalysis.plugin.mpp.experiment.objects.csv |
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| org.anchoranalysis.plugin.mpp.feature.bean.mark.collection |
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| org.anchoranalysis.plugin.mpp.feature.bean.mark.direction |
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| org.anchoranalysis.plugin.mpp.feature.bean.mark.radii |
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| org.anchoranalysis.plugin.mpp.feature.bean.mark.region |
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| org.anchoranalysis.plugin.mpp.feature.bean.memo.all |
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| org.anchoranalysis.plugin.mpp.feature.bean.memo.ind |
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| org.anchoranalysis.plugin.mpp.feature.bean.memo.pair |
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| org.anchoranalysis.plugin.mpp.feature.bean.memo.pair.distance |
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| org.anchoranalysis.plugin.mpp.feature.bean.memo.pair.overlap |
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| org.anchoranalysis.plugin.mpp.feature.bean.unit |
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| org.anchoranalysis.plugin.mpp.feature.overlap |
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| org.anchoranalysis.plugin.mpp.segment |
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| org.anchoranalysis.plugin.mpp.segment.bean.annealing |
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| org.anchoranalysis.plugin.mpp.segment.bean.kernel.dependent.mark |
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| org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent |
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| org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent.pixelized |
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| org.anchoranalysis.plugin.mpp.segment.bean.kernel.proposer |
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| org.anchoranalysis.plugin.mpp.segment.bean.marks |
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| org.anchoranalysis.plugin.mpp.segment.bean.marks.dual |
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| org.anchoranalysis.plugin.mpp.segment.bean.marks.partition |
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| org.anchoranalysis.plugin.mpp.segment.bean.marks.voxelized |
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| org.anchoranalysis.plugin.mpp.segment.bean.marks.weight |
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| org.anchoranalysis.plugin.mpp.segment.bean.optimization.extract |
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| org.anchoranalysis.plugin.mpp.segment.bean.optimization.kernelbridge |
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| org.anchoranalysis.plugin.mpp.segment.bean.optimization.mode |
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| org.anchoranalysis.plugin.mpp.segment.bean.optimization.reporter |
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| org.anchoranalysis.plugin.mpp.segment.bean.optimization.scheme |
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| org.anchoranalysis.plugin.mpp.segment.bean.optimization.statereporter |
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| org.anchoranalysis.plugin.mpp.segment.bean.optimization.termination |
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| org.anchoranalysis.plugin.mpp.segment.kernel.assigner |
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| org.anchoranalysis.plugin.mpp.segment.kernel.updater |
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| org.anchoranalysis.plugin.mpp.segment.optimization |
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| org.anchoranalysis.plugin.opencv |
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| org.anchoranalysis.plugin.opencv.bean.color |
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| org.anchoranalysis.plugin.opencv.bean.feature |
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| org.anchoranalysis.plugin.opencv.bean.object.segment.stack |
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| org.anchoranalysis.plugin.opencv.bean.stack |
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| org.anchoranalysis.plugin.opencv.convert |
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| org.anchoranalysis.plugin.operator.feature.bean |
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| org.anchoranalysis.plugin.operator.feature.bean.arithmetic |
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| org.anchoranalysis.plugin.operator.feature.bean.conditional |
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| org.anchoranalysis.plugin.operator.feature.bean.list |
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| org.anchoranalysis.plugin.operator.feature.bean.range |
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| org.anchoranalysis.plugin.operator.feature.bean.range.feature |
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| org.anchoranalysis.plugin.operator.feature.bean.replace |
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| org.anchoranalysis.plugin.operator.feature.bean.score |
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| org.anchoranalysis.plugin.operator.feature.physical |
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| org.anchoranalysis.plugin.operator.feature.score |
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| org.anchoranalysis.plugin.points.bean.contour |
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| org.anchoranalysis.plugin.points.bean.feature.object.conic |
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| org.anchoranalysis.plugin.points.bean.fitter |
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| org.anchoranalysis.plugin.points.bean.mark.proposer.single |
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| org.anchoranalysis.plugin.points.bean.mark.provider.collection |
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| org.anchoranalysis.plugin.points.bean.mark.provider.single |
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| org.anchoranalysis.plugin.points.bean.mask.provider |
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| org.anchoranalysis.plugin.points.bean.provider.object |
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| org.anchoranalysis.plugin.points.calculate |
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| org.anchoranalysis.plugin.points.calculate.ellipse |
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| org.anchoranalysis.plugin.points.calculate.ellipsoid |
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| org.anchoranalysis.plugin.points.contour |
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| org.anchoranalysis.plugin.points.convexhull |
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| org.anchoranalysis.plugin.quick.bean.experiment |
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| org.anchoranalysis.plugin.quick.bean.file.path.derive |
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| org.anchoranalysis.plugin.quick.bean.input |
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| org.anchoranalysis.plugin.quick.bean.input.filepathappend |
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| org.anchoranalysis.plugin.quick.bean.structure |
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| org.anchoranalysis.spatial |
Classes for geometry or other mathematical operations in Euclidian space.
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| org.anchoranalysis.spatial.axis |
Identifying the three standard axes in 3D cartesian coordinates.
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| org.anchoranalysis.spatial.box |
Axis-aligned bounding-boxes and related operations.
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| org.anchoranalysis.spatial.point |
A cartesian-coordinate, across varying primitive types, in 2D and 3D space.
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| org.anchoranalysis.spatial.point.consumer |
Functional interfaces that accept cartesian coordinate points specified in different ways.
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| org.anchoranalysis.spatial.rotation |
A matrix to apply a rotation to a point.
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| org.anchoranalysis.spatial.rotation.factory |
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| org.anchoranalysis.spatial.rtree |
R-Tree data structure and related operations.
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| org.anchoranalysis.spatial.scale |
How to much to scale an entity in Cartesian space by.
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| org.anchoranalysis.test |
Testing utilities and fixtures with no greater downstream dependency than anchor-core.
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| org.anchoranalysis.test.experiment |
Testing utilities and fixtures with no greater downstream dependency than
anchor-experiment or anchor-mpp or anchor-mpp-io.
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| org.anchoranalysis.test.experiment.launcher |
Launches an anchor binary from a shell and runs an experiment.
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| org.anchoranalysis.test.feature |
Testing utilities and fixtures with no greater downstream dependency than anchor-feature.
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| org.anchoranalysis.test.feature.plugins |
Testing utilities and fixtures with no greater downstream dependency than
anchor-image-feature or anchor-mpp.
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| org.anchoranalysis.test.feature.plugins.mockfeature |
A mocked feature internally using a feature-calculation.
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| org.anchoranalysis.test.feature.plugins.objects |
Fixtures for creating object-masks and related feature-inputs.
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