Package | Description |
---|---|
org.anchoranalysis.bean.permute.property |
Applying permutations to the properties of a bean.
|
org.anchoranalysis.bean.primitive |
Beans that implement collections of primitive element types, as well as
String . |
org.anchoranalysis.feature.bean.list |
A feature-list (custom list type for features) and associated providers.
|
org.anchoranalysis.image.core.stack.named |
A collection of
Stack s, each with a unique identifier
as a name. |
org.anchoranalysis.io.input.bean.path.matcher |
Beans to find a subset of files that match a particular conditions on their paths.
|
org.anchoranalysis.io.output.bean.enabled |
Beans indicating whether a particular output is enabled or not.
|
org.anchoranalysis.io.output.bean.rules |
Rules for determining if a particular output is enabled or not in a context of a hierarchy.
|
org.anchoranalysis.plugin.image.feature.bean.list.permute |
Implementations of
FeatureListProvider that derive
new features with permuted property-values. |
org.anchoranalysis.plugin.io.bean.file.provider |
Implementations of
FilesProvider . |
org.anchoranalysis.plugin.io.bean.stack.reader |
Implementations of
StackReader . |
org.anchoranalysis.plugin.mpp.experiment.bean.objects |
Tasks involving
ObjectMask s. |
org.anchoranalysis.plugin.quick.bean.experiment |
Quickly defining experiments via several assumptions, including particular file-paths.
|
org.anchoranalysis.plugin.quick.bean.structure |
Specifying a structure of subdirectories and filenames when quickly defining an experiment.
|
Modifier and Type | Method and Description |
---|---|
StringSet |
PermuteProperty.getAdditionalPropertyPaths()
Additional property paths that are also changed, together with
propertyPath . |
StringSet |
PermutePropertyStringSet.getValues()
The respect string values to assign during the permutation.
|
Modifier and Type | Method and Description |
---|---|
void |
PermuteProperty.setAdditionalPropertyPaths(StringSet additionalPropertyPaths)
Additional property paths that are also changed, together with
propertyPath . |
void |
PermutePropertyStringSet.setValues(StringSet values)
The respect string values to assign during the permutation.
|
Modifier and Type | Method and Description |
---|---|
StringSet |
StringSet.duplicateBean()
Duplicate the bean.
|
Modifier and Type | Method and Description |
---|---|
StringSet |
ReferencingFeatureListProvider.getReferences()
The names of other feature-lists, whose features may be referenced by this feature.
|
Modifier and Type | Method and Description |
---|---|
void |
ReferencingFeatureListProvider.setReferences(StringSet references)
The names of other feature-lists, whose features may be referenced by this feature.
|
Modifier and Type | Method and Description |
---|---|
NamedStacks |
NamedStacks.subset(StringSet identifiersToInclude)
Creates a new collection containing only items whose keys exist in a particular set.
|
Modifier and Type | Method and Description |
---|---|
StringSet |
MatchExtensions.getExtensions()
A set of file-extensions (without the period), one of which must match the end of a path.
|
Modifier and Type | Method and Description |
---|---|
void |
MatchExtensions.setExtensions(StringSet extensions)
A set of file-extensions (without the period), one of which must match the end of a path.
|
Modifier and Type | Method and Description |
---|---|
StringSet |
SpecificDisabled.getOutputsDisabled()
The names of the outputs that are disbled.
|
StringSet |
SpecificEnabled.getOutputsEnabled()
The names of the outputs that are enabled.
|
Modifier and Type | Method and Description |
---|---|
void |
SpecificDisabled.setOutputsDisabled(StringSet outputsDisabled)
The names of the outputs that are disbled.
|
void |
SpecificEnabled.setOutputsEnabled(StringSet outputsEnabled)
The names of the outputs that are enabled.
|
Constructor and Description |
---|
SpecificDisabled(StringSet outputsDisabled) |
SpecificEnabled(StringSet outputsEnabled) |
Modifier and Type | Method and Description |
---|---|
StringSet |
OutputEnableRulesSpecify.getFirst()
Output-names in the first-level.
|
Modifier and Type | Method and Description |
---|---|
List<NamedBean<StringSet>> |
OutputEnableRulesSpecify.getSecond()
Output-names in the second-level (for all first level output-names).
|
Modifier and Type | Method and Description |
---|---|
protected SingleLevelOutputEnabled |
NoneExcept.createSecondLevelFromSet(StringSet outputNames) |
protected SingleLevelOutputEnabled |
IgnoreUnderscorePrefixUnless.createSecondLevelFromSet(StringSet outputNames) |
protected SingleLevelOutputEnabled |
AddToDefaults.createSecondLevelFromSet(StringSet outputNames) |
protected SingleLevelOutputEnabled |
PermissiveExcept.createSecondLevelFromSet(StringSet outputNames) |
protected abstract SingleLevelOutputEnabled |
OutputEnableRulesSpecify.createSecondLevelFromSet(StringSet outputNames)
Creates a new second-level
SingleLevelOutputEnabled from the relevant set of strings. |
void |
OutputEnableRulesSpecify.setFirst(StringSet first)
Output-names in the first-level.
|
Modifier and Type | Method and Description |
---|---|
void |
OutputEnableRulesSpecify.setSecond(List<NamedBean<StringSet>> second)
Output-names in the second-level (for all first level output-names).
|
Constructor and Description |
---|
IgnoreUnderscorePrefixUnless(StringSet first)
Create with first-level output names
|
NoneExcept(StringSet first)
Create with first-level output names
|
OutputEnableRulesSpecify(StringSet first)
Create with a specific set of first-level output names.
|
PermissiveExcept(StringSet first)
Create with first-level output names
|
Modifier and Type | Method and Description |
---|---|
StringSet |
PermuteFeature.getReferencesFeatureListCreator()
Makes sure a particular feature list creator is evaluated
|
Modifier and Type | Method and Description |
---|---|
void |
PermuteFeature.setReferencesFeatureListCreator(StringSet referencesFeatureListCreator)
Makes sure a particular feature list creator is evaluated
|
Modifier and Type | Method and Description |
---|---|
StringSet |
FileSetFromStringSet.getPaths() |
Modifier and Type | Method and Description |
---|---|
void |
FileSetFromStringSet.setPaths(StringSet paths) |
Modifier and Type | Method and Description |
---|---|
StringSet |
BranchExtension.getExtensions()
Any extensions to match (case insensitive) excluding any leading period.
|
Modifier and Type | Method and Description |
---|---|
void |
BranchExtension.setExtensions(StringSet extensions)
Any extensions to match (case insensitive) excluding any leading period.
|
Modifier and Type | Method and Description |
---|---|
StringSet |
ExportObjectsAsCroppedImages.getOutputRGBOutline() |
StringSet |
ExportObjectsAsCroppedImages.getOutputRGBOutlineFlattened() |
Modifier and Type | Method and Description |
---|---|
void |
ExportObjectsAsCroppedImages.setOutputRGBOutline(StringSet outputRGBOutline) |
void |
ExportObjectsAsCroppedImages.setOutputRGBOutlineFlattened(StringSet outputRGBOutlineFlattened) |
Modifier and Type | Method and Description |
---|---|
StringSet |
QuickMultiDatasetExperiment.getDatasets() |
Modifier and Type | Method and Description |
---|---|
void |
QuickMultiDatasetExperiment.setDatasets(StringSet datasets) |
Modifier and Type | Method and Description |
---|---|
StringSet |
QuickMultiDatasetStructuredExperiment.getDatasets() |
Modifier and Type | Method and Description |
---|---|
void |
QuickMultiDatasetStructuredExperiment.setDatasets(StringSet datasets) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.