Package org.anchoranalysis.plugin.io.bean.stack.reader

Class BranchExtension

Object

AnchorBean<StackReader>

StackReader

BranchExtension

public class BranchExtension
extends StackReader

If the extension(s) of a path matches a particular value, then use a particular reader, otherwise a fallback.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
BranchExtension()

Method Summary

Modifier and Type	Method	Description
StringSet	getExtensions()	Any extensions to match (case insensitive) excluding any leading period.
StackReader	getReaderMatching()	The reader to use if the extension matches.
StackReader	getReaderNotMatching()	The reader to use if the extension does not match.
OpenedImageFile	openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)	Opens a file containing one or more images.
void	setExtensions(StringSet extensions)	Any extensions to match (case insensitive) excluding any leading period.
void	setReaderMatching(StackReader readerMatching)	The reader to use if the extension matches.
void	setReaderNotMatching(StackReader readerNotMatching)	The reader to use if the extension does not match.

Methods inherited from class org.anchoranalysis.image.io.bean.stack.reader.StackReader

readStack

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BranchExtension

public BranchExtension()

Method Details

openFile

public OpenedImageFile openFile(Path path,
 ExecutionTimeRecorder executionTimeRecorder)
                         throws ImageIOException

Description copied from class: StackReader

Opens a file containing one or more images.

This method should run as computationally quicky as possible. Image voxels should not yet be read.

Specified by:

openFile in class StackReader

Parameters:

path - where the file is located.

executionTimeRecorder - records the execution-times of certain operations.

Returns:

an interface to the opened file that should be closed when no longer in use.

Throws:

ImageIOException - if the file cannot be read.

getExtensions

public StringSet getExtensions()

Any extensions to match (case insensitive) excluding any leading period.

setExtensions

public void setExtensions(StringSet extensions)

Any extensions to match (case insensitive) excluding any leading period.

getReaderMatching

public StackReader getReaderMatching()

The reader to use if the extension matches.

setReaderMatching

public void setReaderMatching(StackReader readerMatching)

The reader to use if the extension matches.

getReaderNotMatching

public StackReader getReaderNotMatching()

The reader to use if the extension does not match.

setReaderNotMatching

public void setReaderNotMatching(StackReader readerNotMatching)

The reader to use if the extension does not match.