Package | Description |
---|---|
org.anchoranalysis.bean.define |
Define and related-classes. |
org.anchoranalysis.bean.exception |
Exceptions that can occur executing generic operations on Anchor Beans.
|
org.anchoranalysis.bean.permute.assign |
Imposes a permutation value on one or more properties of a bean.
|
org.anchoranalysis.bean.xml.exception |
Exceptions that can thrown when loading beans from XML.
|
org.anchoranalysis.core.exception |
Very general exceptions and base classes for exceptions with wide applicability.
|
org.anchoranalysis.core.exception.combinable |
Nested exceptions of similar type that can be combined together in a summary.
|
org.anchoranalysis.core.exception.friendly |
Particular types of exceptions that are guaranteed to have a text/form that gives user-friendly
error descriptions.
|
org.anchoranalysis.core.identifier.provider |
A collection of named-elements, a
NamedProvider and related operations. |
org.anchoranalysis.core.index |
Classes to support getting / setting / specifying unique-integers (indices) for elements.
|
org.anchoranalysis.core.serialize |
Utilities for serializing and deserializing objects.
|
org.anchoranalysis.core.system.path |
Utilities for converting/manipulating file-paths.
|
org.anchoranalysis.experiment |
Classes related to executing an experiment by calling jobs on inputs.
|
org.anchoranalysis.feature.calculate |
Sub-feature units of calculation that can be cached.
|
org.anchoranalysis.image.bean.nonbean |
Classes that are used elsewhere in this package but which aren't themselves AnchorBeans.
|
org.anchoranalysis.image.bean.nonbean.segment |
Non-bean classes relating to image-segmentation.
|
org.anchoranalysis.image.bean.nonbean.spatial.arrange |
Non-beans to specify how to form a single-image by spatially combining other images.
|
org.anchoranalysis.image.core.dimensions |
Classes to describe the size of images or components of images both in voxels and physically.
|
org.anchoranalysis.image.core.dimensions.size.suggestion |
Suggestions on a size for an image.
|
org.anchoranalysis.image.io |
Reading and writing of image-related data objects to and from the filesystem.
|
org.anchoranalysis.inference.concurrency |
Specifying how many CPUs and GPUs can be allocated for some purpose.
|
org.anchoranalysis.io.imagej.convert |
Converts to and from ImageJ data-structures for images.
|
org.anchoranalysis.io.input |
Classes relating to creating inputs for an experiment / task.
|
org.anchoranalysis.io.input.csv |
Classes for reading comma-separated-values (CSV) files.
|
org.anchoranalysis.io.input.file |
Non-bean classes that relate to using files during inputting.
|
org.anchoranalysis.io.input.path |
Non-bean classes pertaining to getting/extracting/manipulating paths as used in inputting.
|
org.anchoranalysis.io.input.path.matcher |
Non-bean classes to help with
org.anchoranalysis.io.input.bean.path.matcher . |
org.anchoranalysis.io.output.error |
Exceptions that may be thrown when writing files to the file-system.
|
org.anchoranalysis.io.output.outputter |
Classes for outputting to particular directories.
|
org.anchoranalysis.io.output.path.prefixer |
Non-beans for generating paths for outputting files by adding a prefix, suffix etc.
|
org.anchoranalysis.launcher.executor.selectparam.path.convert |
Converting paths to/from different formats as needed by
org.anchoranalysis.launcher.executor.selectparam.path . |
org.anchoranalysis.mpp.bean.points.fitter |
Fitting structures to sets of points.
|
org.anchoranalysis.mpp.feature.addcriteria |
Criteria for adding edges during optimization of marked-point-processes.
|
org.anchoranalysis.mpp.feature.error |
Exceptions relating to
Feature s involving classes from
anchor-mpp . |
org.anchoranalysis.mpp.mark |
Non-bean classes related to
Mark s. |
org.anchoranalysis.mpp.proposer |
Non-bean classes for proposing
Mark s or other data-structures
with particular attributes. |
org.anchoranalysis.mpp.proposer.error |
Recording errors related to proposing
Mark s or other
data-structures with particular attributes. |
org.anchoranalysis.mpp.segment.optimization |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization |
org.anchoranalysis.mpp.segment.optimization.feedback |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization.feedback |
org.anchoranalysis.mpp.segment.optimization.feedback.aggregate |
Aggregating optimization feedback over time.
|
org.anchoranalysis.mpp.segment.optimization.feedback.period |
Collecting optimization feedback periodically.
|
org.anchoranalysis.mpp.segment.optimization.kernel |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization.kernel |
org.anchoranalysis.plugin.mpp.bean.contour |
Retrieving the contour outline pixels along the exterior outer contour of an
ObjectMask . |
org.anchoranalysis.spatial.axis |
Identifying the three standard axes in 3D cartesian coordinates.
|
Modifier and Type | Class and Description |
---|---|
class |
DefineAddException
Called when a bean fails to be added to a
Define . |
Modifier and Type | Class and Description |
---|---|
class |
BeanMisconfiguredException
If a Bean is misconfigured.
|
Modifier and Type | Class and Description |
---|---|
class |
AssignPermutationException
When the assignment of a permuted value to a property cannot succeed.
|
Modifier and Type | Class and Description |
---|---|
class |
BeanMisconfiguredXMLException
A bean's XML is thrown when a bean has misconfigured XML.
|
class |
BeanXMLException
An exception that occurs when one cannot process BeanXML for some reason.
|
class |
LocalisedBeanException
Combines a chain of many exceptions into a single exception, searching for an ultimate cause and
incorporating the messages from the chain into a single unified message.
|
class |
ProvisionFailedException
If provisioning an object fails.
|
Modifier and Type | Class and Description |
---|---|
class |
CheckedUnsupportedOperationException
When a particular operation is unsupported in particular circumstances.
|
class |
CreateException
A generic exception that be thrown when the creation of a new object fails.
|
class |
InitializeException
An exception that occurs when initializing something, and it doesn't succeed
|
class |
OperationFailedException
Generic checked exception that can be thrown when a particular operation fails.
|
Modifier and Type | Class and Description |
---|---|
class |
AnchorCombinableException
An exception that can be combined with similar exceptions and summarized.
|
class |
SummaryException
A special kind of exception that represents a summary of an existing set of exceptions.
|
Modifier and Type | Class and Description |
---|---|
class |
AnchorFriendlyCheckedException
A base class for particular checked-exceptions which are guaranteed to provide a user-friendly
error description.
|
Modifier and Type | Class and Description |
---|---|
class |
NamedProviderGetException
When a get operation fails with a
NamedProvider . |
Modifier and Type | Class and Description |
---|---|
class |
GetOperationFailedException
When a get operation fails for a particular key.
|
class |
SetOperationFailedException
When a set operation fails for a particular key.
|
Modifier and Type | Class and Description |
---|---|
class |
DeserializationFailedException
When a deserialization operation fails.
|
Modifier and Type | Class and Description |
---|---|
class |
PathDifferenceException
When an error occurs calculating the difference between two file-paths.
|
Modifier and Type | Class and Description |
---|---|
class |
ExperimentExecutionException
An exception that occurs when an experiment is executed.
|
class |
JobExecutionException
An exception that occurs when a job is executed.
|
Modifier and Type | Class and Description |
---|---|
class |
FeatureCalculationException
When the calculation of a feature cannot complete successfully.
|
class |
NamedFeatureCalculateException
An exception that occurs when a feature fails to successfully calculate.
|
Modifier and Type | Class and Description |
---|---|
class |
UnitValueException
When a failure occurs converting from one type of units to another.
|
Modifier and Type | Class and Description |
---|---|
class |
SegmentationFailedException
When a segmentation cannot successfully complete.
|
Modifier and Type | Class and Description |
---|---|
class |
ArrangeStackException
When the position of a particular
RGBStack cannot be determined, when combined with
others onto a single plane. |
Modifier and Type | Class and Description |
---|---|
class |
IncorrectImageSizeException
When an image has incompatible image-size with expectations.
|
Modifier and Type | Class and Description |
---|---|
class |
SuggestionFormatException
An exception thrown by
ImageSizeSuggestionFactory to indicate a format is invalid or
unknown. |
Modifier and Type | Class and Description |
---|---|
class |
ImageIOException
When an error occurs reading or writing an image to/from the file-system.
|
Modifier and Type | Class and Description |
---|---|
class |
ConcurrentModelException
This exception indicates that an error occurred when performing inference from a model
concurrently.
|
class |
CreateModelFailedException
When creating a model to be used for inference fails.
|
Modifier and Type | Class and Description |
---|---|
class |
ImageJConversionException
When conversion to ImageJ data/type is not possible, or an error occurs during conversion.
|
Modifier and Type | Class and Description |
---|---|
class |
InputReadFailedException
When an error occurs reading an input.
|
Modifier and Type | Class and Description |
---|---|
class |
CSVReaderException
When an error occurs reading a CSV file.
|
Modifier and Type | Class and Description |
---|---|
class |
FilesProviderException
When an error occurs providing a set of files.
|
Modifier and Type | Class and Description |
---|---|
class |
DerivePathException
When an error occurs deriving a path from another path.
|
Modifier and Type | Class and Description |
---|---|
class |
FindFilesException
When an error occurs finding files.
|
Modifier and Type | Class and Description |
---|---|
class |
OutputWriteFailedException |
Modifier and Type | Class and Description |
---|---|
class |
BindFailedException |
Modifier and Type | Class and Description |
---|---|
class |
PathPrefixerException |
Modifier and Type | Class and Description |
---|---|
class |
InvalidPathArgumentException
An exception throw if an invalid-path is inputted as an argument.
|
Modifier and Type | Class and Description |
---|---|
class |
InsufficientPointsException |
class |
PointsFitterException |
Modifier and Type | Class and Description |
---|---|
class |
IncludeMarksFailureException |
Modifier and Type | Class and Description |
---|---|
class |
CheckException |
Modifier and Type | Class and Description |
---|---|
class |
UnsupportedMarkTypeException |
class |
UpdateMarkSetException |
Modifier and Type | Class and Description |
---|---|
class |
ProposalAbnormalFailureException
An exception when a proposal could not be made for an abnormal reason
|
class |
ProposerException
An exception thrown when something goes wrong in a Proposer
|
Modifier and Type | Class and Description |
---|---|
class |
ErrorNodeException |
Modifier and Type | Class and Description |
---|---|
class |
OptimizationTerminatedEarlyException |
Modifier and Type | Class and Description |
---|---|
class |
ReporterException |
Modifier and Type | Class and Description |
---|---|
class |
AggregatorException |
Modifier and Type | Class and Description |
---|---|
class |
PeriodReceiverException |
Modifier and Type | Class and Description |
---|---|
class |
KernelCalculateEnergyException |
Modifier and Type | Class and Description |
---|---|
class |
TraverseContourException |
Modifier and Type | Class and Description |
---|---|
class |
AxisConversionException
When converting another type to a corresponding
Axis fails. |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.