org.anchoranalysis.mpp.mark

Class Mark

Object

Mark

All Implemented Interfaces:

Serializable, Identifiable

Direct Known Subclasses:

LineSegment, MarkWithPosition, PointListBase

public abstract class Mark
extends Object
implements Serializable, Identifiable

See Also:

Serialized Form

Constructor Summary

Constructors

Modifier	Constructor and Description
	Mark()
protected	Mark(Mark source) Copy constructor

Method Summary

Modifier and Type	Method and Description
abstract BoundingBox	box(Dimensions dimensions, int regionID)
abstract BoundingBox	boxAllRegions(Dimensions dimensions)
abstract Point3d	centerPoint()
ObjectWithProperties	deriveObject(Dimensions dimensions, RegionMembershipWithFlags rm, BinaryValuesByte bv) Create an object-mask representation of the mark (i.e.
abstract Mark	duplicate()
boolean	equalsDeep(Mark m)
boolean	equalsID(Object obj)
protected byte	evalPointInside(Point3i point)
OverlayProperties	generateProperties(Optional<Resolution> resolution)
int	getIdentifier()
abstract String	getName()
String	identifier()
abstract byte	isPointInside(Point3d point)
ObjectWithProperties	maskScaledXY(Dimensions bndScene, RegionMembershipWithFlags rm, BinaryValuesByte bvOut, double scaleFactor)
abstract int	numberDimensions()
abstract int	numberRegions()
Optional<QuickOverlapCalculation>	quickOverlap() An alternative "quick" metric for overlap for a mark
abstract void	scale(double scaleFactor) Scales the mark in X and Y dimensions.
void	setId(int id)
abstract String	toString() String representation of the mark
abstract double	volume(int regionID)

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Mark

protected Mark(Mark source)

Copy constructor

Parameters:

source - source to copy from

Mark

public Mark()

Method Detail

isPointInside

public abstract byte isPointInside(Point3d point)

duplicate

public abstract Mark duplicate()

numberRegions

public abstract int numberRegions()

getName

public abstract String getName()

quickOverlap

public Optional<QuickOverlapCalculation> quickOverlap()

An alternative "quick" metric for overlap for a mark

volume

public abstract double volume(int regionID)

toString

public abstract String toString()

String representation of the mark

Overrides:

toString in class Object

scale

public abstract void scale(double scaleFactor)
                    throws OptionalOperationUnsupportedException

Scales the mark in X and Y dimensions.

Parameters:

scaleFactor - how much to scale by.

Throws:

OptionalOperationUnsupportedException - if the type of mark used in the annotation does not supported scaling.

numberDimensions

public abstract int numberDimensions()

centerPoint

public abstract Point3d centerPoint()

box

public abstract BoundingBox box(Dimensions dimensions,
                                int regionID)

boxAllRegions

public abstract BoundingBox boxAllRegions(Dimensions dimensions)

evalPointInside

protected byte evalPointInside(Point3i point)

equalsID

public boolean equalsID(Object obj)

equalsDeep

public boolean equalsDeep(Mark m)

deriveObject

public ObjectWithProperties deriveObject(Dimensions dimensions,
                                         RegionMembershipWithFlags rm,
                                         BinaryValuesByte bv)

Create an object-mask representation of the mark (i.e. in voxels in a bounding-box)

Parameters:

dimensions -

rm -

bv -

Returns:

maskScaledXY

public ObjectWithProperties maskScaledXY(Dimensions bndScene,
                                         RegionMembershipWithFlags rm,
                                         BinaryValuesByte bvOut,
                                         double scaleFactor)

identifier

public String identifier()

getIdentifier

public int getIdentifier()

Specified by:

getIdentifier in interface Identifiable

setId

public void setId(int id)

generateProperties

public OverlayProperties generateProperties(Optional<Resolution> resolution)