Uses of Enum Class
org.anchoranalysis.core.format.ImageFileFormat

Packages that use ImageFileFormat

Package	Description
org.anchoranalysis.core.format	File formats and associated extensions.
org.anchoranalysis.experiment.arguments	Arguments that can further specify an experiment in addition to its bean specification.
org.anchoranalysis.image.io.bean.stack.writer	Bean classes for writing raster-files to the filesystem.
org.anchoranalysis.image.io.stack.output	Non-bean classes for writing a Stack to the filesystem.
org.anchoranalysis.io.bioformats.bean.writer	Writing stacks to the file system using the Bioformats library.
org.anchoranalysis.io.imagej.bean.stack.writer	Raster-writers that use ImageJ to write images to the filesystem.
org.anchoranalysis.io.output.bean	Beans for the framework around writing files to the file-system.
org.anchoranalysis.io.output.outputter	Classes for outputting to particular directories.
org.anchoranalysis.io.output.path.prefixer	Non-beans for generating paths for outputting files by adding a prefix, suffix etc.
org.anchoranalysis.io.output.writer	Allows a generators to write element(s) to the filesystem.
org.anchoranalysis.plugin.io.bean.metadata.header	Different types of image-file-formats whose headers can provide ImageMetadata.
org.anchoranalysis.plugin.io.bean.stack.writer	Implementations of StackWriter.
org.anchoranalysis.test.image.rasterwriter.comparison	Different ways for comparing images.
org.anchoranalysis.test.image.stackwriter	Fixtures for testing StackWriter and related classes.

Uses of ImageFileFormat in org.anchoranalysis.core.format

Methods in org.anchoranalysis.core.format that return ImageFileFormat

Modifier and Type	Method	Description
static ImageFileFormat	ImageFileFormat.valueOf(String name)	Returns the enum constant of this class with the specified name.
static ImageFileFormat[]	ImageFileFormat.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in org.anchoranalysis.core.format that return types with arguments of type ImageFileFormat

Modifier and Type	Method	Description
static Optional<ImageFileFormat>	FileFormatFactory.createImageFormat(String identifier)	Creates a ImageFileFormat from an identifier string if its equal to any extension associated with the image file formats in ImageFileFormat.

Uses of ImageFileFormat in org.anchoranalysis.experiment.arguments

Methods in org.anchoranalysis.experiment.arguments with parameters of type ImageFileFormat

Modifier and Type	Method	Description
void	OutputArguments.assignSuggestedImageOutputFormat(ImageFileFormat format)	Assigns a suggestion for a preferred image-output format.

Uses of ImageFileFormat in org.anchoranalysis.image.io.bean.stack.writer

Methods in org.anchoranalysis.image.io.bean.stack.writer that return ImageFileFormat

Modifier and Type	Method	Description
ImageFileFormat	OneOrThreeChannelsWriter.fileFormat(StackWriteOptions writeOptions)
abstract ImageFileFormat	StackWriter.fileFormat(StackWriteOptions writeOptions)	The file format that will be written by the generator.
ImageFileFormat	StackWriter.fileFormatWarnUnexpected(StackWriteOptions writeOptions, Optional<Logger> logger)	The file format that will be written by the generator, warning with a log message if different to suggestion.

Uses of ImageFileFormat in org.anchoranalysis.image.io.stack.output

Methods in org.anchoranalysis.image.io.stack.output that return types with arguments of type ImageFileFormat

Modifier and Type	Method	Description
Optional<ImageFileFormat>	StackWriteOptions.getSuggestedFormatToWrite()	A suggestion on what file-format to write.

Constructor parameters in org.anchoranalysis.image.io.stack.output with type arguments of type ImageFileFormat

Modifier	Constructor	Description
	StackWriteOptions(StackWriteAttributes attributes, Optional<ImageFileFormat> suggestedFormatToWrite)	Creates a new StackWriteOptions instance.

Uses of ImageFileFormat in org.anchoranalysis.io.bioformats.bean.writer

Methods in org.anchoranalysis.io.bioformats.bean.writer that return ImageFileFormat

Modifier and Type	Method	Description
ImageFileFormat	OMETiff.fileFormat(StackWriteOptions writeOptions)
ImageFileFormat	OMEXML.fileFormat(StackWriteOptions writeOptions)
ImageFileFormat	Tiff.fileFormat(StackWriteOptions writeOptions)

Uses of ImageFileFormat in org.anchoranalysis.io.imagej.bean.stack.writer

Methods in org.anchoranalysis.io.imagej.bean.stack.writer that return ImageFileFormat

Modifier and Type	Method	Description
ImageFileFormat	PNG.fileFormat(StackWriteOptions writeOptions)
ImageFileFormat	Tiff.fileFormat(StackWriteOptions writeOptions)

Uses of ImageFileFormat in org.anchoranalysis.io.output.bean

Method parameters in org.anchoranalysis.io.output.bean with type arguments of type ImageFileFormat

Modifier and Type	Method	Description
OutputWriteContext	OutputManager.createContextForWriting(Optional<ImageFileFormat> suggestedFormatToWrite, ExecutionTimeRecorder executionTimeRecorder)	Creates the OutputWriteContext needed for writing files.

Uses of ImageFileFormat in org.anchoranalysis.io.output.outputter

Methods in org.anchoranalysis.io.output.outputter that return types with arguments of type ImageFileFormat

Modifier and Type	Method	Description
Optional<ImageFileFormat>	OutputWriteContext.getSuggestedFormatToWrite()	A suggestion on what file-format to write.

Constructor parameters in org.anchoranalysis.io.output.outputter with type arguments of type ImageFileFormat

Modifier	Constructor	Description
	OutputWriteContext(OutputWriteSettings settings, Optional<ImageFileFormat> suggestedFormatToWrite, ExecutionTimeRecorder executionTimeRecorder)	Creates a new OutputWriteContext instance.

Uses of ImageFileFormat in org.anchoranalysis.io.output.path.prefixer

Methods in org.anchoranalysis.io.output.path.prefixer that return types with arguments of type ImageFileFormat

Modifier and Type	Method	Description
Optional<ImageFileFormat>	OutputPrefixerSettings.getSuggestedImageOutputFormat()	A file format suggested for writing images to the file system.

Methods in org.anchoranalysis.io.output.path.prefixer with parameters of type ImageFileFormat

Modifier and Type	Method	Description
void	OutputPrefixerSettings.assignSuggestedImageOutputFormat(ImageFileFormat format)	Assigns a suggestion for a preferred image-output format.

Uses of ImageFileFormat in org.anchoranalysis.io.output.writer

Methods in org.anchoranalysis.io.output.writer that return types with arguments of type ImageFileFormat

Modifier and Type	Method	Description
Optional<ImageFileFormat>	ElementOutputter.getSuggestedFormatToWrite()	A suggestion on what file-format to write.

Uses of ImageFileFormat in org.anchoranalysis.plugin.io.bean.metadata.header

Methods in org.anchoranalysis.plugin.io.bean.metadata.header that return ImageFileFormat

Modifier and Type	Method	Description
protected ImageFileFormat	BMP.format()
protected abstract ImageFileFormat	HeaderFormat.format()	The associated ImageFileFormat with this header.
protected ImageFileFormat	JPEG.format()
protected ImageFileFormat	PNG.format()

Uses of ImageFileFormat in org.anchoranalysis.plugin.io.bean.stack.writer

Methods in org.anchoranalysis.plugin.io.bean.stack.writer that return ImageFileFormat

Modifier and Type	Method	Description
ImageFileFormat	StackWriterDelegateBase.fileFormat(StackWriteOptions writeOptions)
ImageFileFormat	WriteResolutionXml.fileFormat(StackWriteOptions writeOptions)

Uses of ImageFileFormat in org.anchoranalysis.test.image.rasterwriter.comparison

Methods in org.anchoranalysis.test.image.rasterwriter.comparison that return types with arguments of type ImageFileFormat

Modifier and Type	Method	Description
Optional<ImageFileFormat>	ComparisonPlan.getFormatVoxelwiseCompare()	The file-format to use for the voxel-wise comparison (if it's activated).

Constructor parameters in org.anchoranalysis.test.image.rasterwriter.comparison with type arguments of type ImageFileFormat

Modifier	Constructor	Description
	ComparisonPlan(boolean bytewiseCompare, Optional<ImageFileFormat> formatVoxelwiseCompare, boolean skipComparisonForRGB)	Creates a plan for particular settings.
	ComparisonPlan(boolean bytewiseCompare, Optional<ImageFileFormat> formatVoxelwiseCompare, boolean skipComparisonForRGB, String directoryPathToCopyMissingImagesTo)	Creates a plan for particular settings - and which copies any missing images to a particular directory.

Uses of ImageFileFormat in org.anchoranalysis.test.image.stackwriter

Constructors in org.anchoranalysis.test.image.stackwriter with parameters of type ImageFileFormat

Modifier	Constructor	Description
	StackWriterTestBase(ImageFileFormat format, boolean include3D, ComparisonPlan comparisonPlan)	Creates a new StackWriterTestBase instance.