Package | Description |
---|---|
org.anchoranalysis.core.format |
File formats and associated extensions.
|
org.anchoranalysis.experiment.arguments |
Arguments that can further specify an experiment in addition to its bean specification.
|
org.anchoranalysis.image.io.bean.stack.writer |
Bean classes for writing raster-files to the filesystem.
|
org.anchoranalysis.image.io.stack.output |
Non-bean classes for writing a
Stack to the
filesystem. |
org.anchoranalysis.io.bioformats.bean.writer |
Writing stacks to the file system using the Bioformats library.
|
org.anchoranalysis.io.imagej.bean.stack.writer |
Raster-writers that use ImageJ to write images to the filesystem.
|
org.anchoranalysis.io.output.bean |
Beans for the framework around writing files to the file-system.
|
org.anchoranalysis.io.output.outputter |
Classes for outputting to particular directories.
|
org.anchoranalysis.io.output.path.prefixer |
Non-beans for generating paths for outputting files by adding a prefix, suffix etc.
|
org.anchoranalysis.io.output.writer |
Allows a generators to write element(s) to the filesystem.
|
org.anchoranalysis.plugin.io.bean.metadata.header |
Different types of image-file-formats whose headers can provide
ImageMetadata . |
org.anchoranalysis.plugin.io.bean.stack.writer |
Implementations of
StackWriter . |
org.anchoranalysis.test.image.rasterwriter.comparison |
Different ways for comparing images.
|
org.anchoranalysis.test.image.stackwriter |
Fixtures for testing
StackWriter and
related classes. |
Modifier and Type | Method and Description |
---|---|
static ImageFileFormat |
ImageFileFormat.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static ImageFileFormat[] |
ImageFileFormat.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
static Optional<ImageFileFormat> |
FileFormatFactory.createImageFormat(String identifier)
Creates a
ImageFileFormat from an identifier string if its equal to any extension
associated with the image file formats in ImageFileFormat . |
Modifier and Type | Method and Description |
---|---|
void |
OutputArguments.assignSuggestedImageOutputFormat(ImageFileFormat format)
Assigns a suggestion for a preferred image-output format.
|
Modifier and Type | Method and Description |
---|---|
ImageFileFormat |
OneOrThreeChannelsWriter.fileFormat(StackWriteOptions writeOptions) |
abstract ImageFileFormat |
StackWriter.fileFormat(StackWriteOptions writeOptions)
The file format that will be written by the generator.
|
ImageFileFormat |
StackWriter.fileFormatWarnUnexpected(StackWriteOptions writeOptions,
Optional<Logger> logger)
The file format that will be written by the generator, warning with a log message if
different to suggestion.
|
Modifier and Type | Method and Description |
---|---|
Optional<ImageFileFormat> |
StackWriteOptions.getSuggestedFormatToWrite()
A suggestion on what file-format to write.
|
Constructor and Description |
---|
StackWriteOptions(StackWriteAttributes attributes,
Optional<ImageFileFormat> suggestedFormatToWrite) |
Modifier and Type | Method and Description |
---|---|
ImageFileFormat |
OMETiff.fileFormat(StackWriteOptions writeOptions) |
ImageFileFormat |
Tiff.fileFormat(StackWriteOptions writeOptions) |
ImageFileFormat |
OMEXML.fileFormat(StackWriteOptions writeOptions) |
Modifier and Type | Method and Description |
---|---|
ImageFileFormat |
PNG.fileFormat(StackWriteOptions writeOptions) |
ImageFileFormat |
Tiff.fileFormat(StackWriteOptions writeOptions) |
Modifier and Type | Method and Description |
---|---|
OutputWriteContext |
OutputManager.createContextForWriting(Optional<ImageFileFormat> suggestedFormatToWrite,
ExecutionTimeRecorder executionTimeRecorder)
Creates the
OutputWriteContext needed for writing files. |
Modifier and Type | Method and Description |
---|---|
Optional<ImageFileFormat> |
OutputWriteContext.getSuggestedFormatToWrite()
A suggestion on what file-format to write.
|
Constructor and Description |
---|
OutputWriteContext(OutputWriteSettings settings,
Optional<ImageFileFormat> suggestedFormatToWrite,
ExecutionTimeRecorder executionTimeRecorder) |
Modifier and Type | Method and Description |
---|---|
Optional<ImageFileFormat> |
OutputPrefixerSettings.getSuggestedImageOutputFormat()
A file format suggested for writing images to the file system.
|
Modifier and Type | Method and Description |
---|---|
void |
OutputPrefixerSettings.assignSuggestedImageOutputFormat(ImageFileFormat format)
Assigns a suggestion for a preferred image-output format.
|
Modifier and Type | Method and Description |
---|---|
Optional<ImageFileFormat> |
ElementOutputter.getSuggestedFormatToWrite() |
Modifier and Type | Method and Description |
---|---|
protected ImageFileFormat |
JPEG.format() |
protected abstract ImageFileFormat |
HeaderFormat.format()
The associated
ImageFileFormat with this header. |
protected ImageFileFormat |
PNG.format() |
protected ImageFileFormat |
BMP.format() |
Modifier and Type | Method and Description |
---|---|
ImageFileFormat |
StackWriterDelegateBase.fileFormat(StackWriteOptions writeOptions) |
ImageFileFormat |
WriteResolutionXml.fileFormat(StackWriteOptions writeOptions) |
Modifier and Type | Method and Description |
---|---|
Optional<ImageFileFormat> |
ComparisonPlan.getFormatVoxelwiseCompare()
The file-format to use for the voxel-wise comparison (if it's activated).
|
Constructor and Description |
---|
ComparisonPlan(boolean bytewiseCompare,
Optional<ImageFileFormat> formatVoxelwiseCompare,
boolean skipComparisonForRGB)
Creates a plan for particular settings.
|
ComparisonPlan(boolean bytewiseCompare,
Optional<ImageFileFormat> formatVoxelwiseCompare,
boolean skipComparisonForRGB,
String directoryPathToCopyMissingImagesTo)
Creates a plan for particular settings - and which copies any missing images to a particular
directory.
|
Constructor and Description |
---|
StackWriterTestBase(ImageFileFormat format,
boolean include3D,
ComparisonPlan comparisonPlan) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.