Uses of Class
org.anchoranalysis.feature.bean.list.FeatureListProvider

Packages that use FeatureListProvider

Package	Description
org.anchoranalysis.feature.bean.list	A feature-list (custom list type for features) and associated providers.
org.anchoranalysis.feature.initialization	Initialization parameters used for beans in org.anchoranalysis.feature.bean.
org.anchoranalysis.feature.store	A collection of named-Features.
org.anchoranalysis.mpp.feature.bean.energy.scheme	Creating EnergySchemes.
org.anchoranalysis.plugin.image.feature.bean.list	Implementations of FeatureListProvider.
org.anchoranalysis.plugin.image.feature.bean.list.pair	Implementations of FeatureListProvider with input-type FeatureInputPairObjects.
org.anchoranalysis.plugin.image.feature.bean.list.permute	Implementations of FeatureListProvider that derive new features with permuted property-values.
org.anchoranalysis.plugin.image.feature.bean.object.combine	Features from combinations of ObjectMasks.
org.anchoranalysis.plugin.image.task.bean.feature	Tasks pertaining to Features.
org.anchoranalysis.plugin.image.task.bean.feature.source	Source of rows in feature-tables with FeatureSource and derived classes.
org.anchoranalysis.plugin.image.task.bean.labeller	Associating labels with images.
org.anchoranalysis.plugin.image.task.bean.segment	Tasks to segment an image.
org.anchoranalysis.plugin.image.task.bean.slice	Tasks that process on one or more slices from a z-stack.
org.anchoranalysis.plugin.image.task.feature	Non-bean classes pertaining to Features as used in tasks.
org.anchoranalysis.plugin.image.task.feature.calculator	Non-beans for calculating Features.
org.anchoranalysis.plugin.opencv.bean.feature	Extracting features using OpenCV.
org.anchoranalysis.test.feature.plugins	Testing utilities and fixtures with no greater downstream dependency than anchor-image-feature or anchor-mpp.

Uses of FeatureListProvider in org.anchoranalysis.feature.bean.list

Subclasses of FeatureListProvider in org.anchoranalysis.feature.bean.list

Modifier and Type	Class	Description
class	Define<T extends FeatureInput>	Specifies a list of features directly without assigning any custom-naming.
class	DefinedNamed<T extends FeatureInput>	Specifies features via a list of names and associated with features.
class	DefineSingle<T extends FeatureInput>	Specifies a single feature directly without assigning any custom-naming.
class	PrependName	Prepends a string to the custom-name of each feature in a list.
class	ReferencingFeatureListProvider<T extends FeatureInput>	A base class for implementations of FeatureListProvider that may reference features created elsewhere.

Methods in org.anchoranalysis.feature.bean.list that return FeatureListProvider

Modifier and Type	Method	Description
FeatureListProvider<FeatureInput>	PrependName.getItem()	Provides the features and names before any prepending.

Methods in org.anchoranalysis.feature.bean.list that return types with arguments of type FeatureListProvider

Modifier and Type	Method	Description
List<NamedBean<FeatureListProvider<T>>>	DefinedNamed.getList()	A list of FeatureListProviders with an associated name.

Methods in org.anchoranalysis.feature.bean.list with parameters of type FeatureListProvider

Modifier and Type	Method	Description
void	PrependName.setItem(FeatureListProvider<FeatureInput> item)	Provides the features and names before any prepending.

Method parameters in org.anchoranalysis.feature.bean.list with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
void	DefinedNamed.setList(List<NamedBean<FeatureListProvider<T>>> list)	A list of FeatureListProviders with an associated name.

Uses of FeatureListProvider in org.anchoranalysis.feature.initialization

Method parameters in org.anchoranalysis.feature.initialization with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
void	FeatureRelatedInitialization.populate(List<NamedBean<FeatureListProvider<FeatureInput>>> namedProviders, Logger logger)	Adds features into the shared-feature storage from a list of named-beans.

Uses of FeatureListProvider in org.anchoranalysis.feature.store

Method parameters in org.anchoranalysis.feature.store with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
<T extends FeatureInput> NamedFeatureStore<T>	NamedFeatureStoreFactory.createNamedFeatureList(List<NamedBean<FeatureListProvider<T>>> namedFeatures)	Create a NamedFeatureStore from a list of beans.

Uses of FeatureListProvider in org.anchoranalysis.mpp.feature.bean.energy.scheme

Methods in org.anchoranalysis.mpp.feature.bean.energy.scheme that return FeatureListProvider

Modifier and Type	Method	Description
FeatureListProvider<FeatureInputAllMemo>	EnergySchemeCreatorByElement.getElemAllCreator()	Optional creator for features considering all elements.
FeatureListProvider<FeatureInputSingleMemo>	EnergySchemeCreatorByElement.getElemIndCreator()	Creates features for individual elements.
FeatureListProvider<FeatureInputPairMemo>	EnergySchemeCreatorByElement.getElemPairCreator()	Creates features for pairs of elements.

Methods in org.anchoranalysis.mpp.feature.bean.energy.scheme that return types with arguments of type FeatureListProvider

Modifier and Type	Method	Description
List<NamedBean<FeatureListProvider<FeatureInputStack>>>	EnergySchemeCreatorByElement.getListImageFeatures()	List of named feature providers for image-based features.

Methods in org.anchoranalysis.mpp.feature.bean.energy.scheme with parameters of type FeatureListProvider

Modifier and Type	Method	Description
void	EnergySchemeCreatorByElement.setElemAllCreator(FeatureListProvider<FeatureInputAllMemo> elemAllCreator)	Optional creator for features considering all elements.
void	EnergySchemeCreatorByElement.setElemIndCreator(FeatureListProvider<FeatureInputSingleMemo> elemIndCreator)	Creates features for individual elements.
void	EnergySchemeCreatorByElement.setElemPairCreator(FeatureListProvider<FeatureInputPairMemo> elemPairCreator)	Creates features for pairs of elements.

Method parameters in org.anchoranalysis.mpp.feature.bean.energy.scheme with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
void	EnergySchemeCreatorByElement.setListImageFeatures(List<NamedBean<FeatureListProvider<FeatureInputStack>>> listImageFeatures)	List of named feature providers for image-based features.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.feature.bean.list

Subclasses of FeatureListProvider in org.anchoranalysis.plugin.image.feature.bean.list

Modifier and Type	Class	Description
class	IntensityMoments	Calculate various moment-related statistics about the intensity of each channel of an image.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.feature.bean.list.pair

Subclasses of FeatureListProvider in org.anchoranalysis.plugin.image.feature.bean.list.pair

Modifier and Type	Class	Description
class	DeriveFromPair	Embeds each feature in a FeatureDeriveFromPair feature (first, second or merge) and prepends with a string.
class	FeatureListProviderAggregatePair	Calculates features on each part of a pair (first, second, merged etc.) and then reduces the calculation to a single number.
class	ReduceFirstAndSecond	Calculates the aggregate of a feature applied to both the first and second objects in a FeatureInputPairObjects.
class	ReduceRatioFirstAndSecond	Calculates the aggregate of the ratio of first:second and second :first for a FeatureInputPairObjects
class	SubtractReducedFromMerged	Calculates merged - reduce(first,second) for a FeatureInputPairObjects

Methods in org.anchoranalysis.plugin.image.feature.bean.list.pair that return FeatureListProvider

Modifier and Type	Method	Description
FeatureListProvider<FeatureInputSingleObject>	DeriveFromPair.getItem()
FeatureListProvider<FeatureInputSingleObject>	FeatureListProviderAggregatePair.getItem()	For each feature in the list, a corresponding aggregate feature is created in the output list.

Methods in org.anchoranalysis.plugin.image.feature.bean.list.pair with parameters of type FeatureListProvider

Modifier and Type	Method	Description
void	DeriveFromPair.setItem(FeatureListProvider<FeatureInputSingleObject> item)
void	FeatureListProviderAggregatePair.setItem(FeatureListProvider<FeatureInputSingleObject> item)	For each feature in the list, a corresponding aggregate feature is created in the output list.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.feature.bean.list.permute

Subclasses of FeatureListProvider in org.anchoranalysis.plugin.image.feature.bean.list.permute

Modifier and Type	Class	Description
class	PermuteDivideByParam<T extends FeatureInputDictionary>	Similar to FeatureListProviderPermute but embeds the feature in a GaussianScore
class	PermuteFeature<S,T extends FeatureInput>	Permutes one or more properties of a Feature, so as to create a set of Features
class	PermuteFeatureBase<T extends FeatureInput>	Creates permutations of a feature by modifying a particular property of it in different ways.
class	PermuteFeatureSequenceInteger<T extends FeatureInputDictionary>	Permutes a property on a feature with a sequence of integers.
class	PermuteFirstSecondOrder<T extends FeatureInputDictionary>	Permutes a feature by applying first and second order statistical operations.
class	PermuteGaussianScore<T extends FeatureInputDictionary>	Permutes a feature by embedding it in a GaussianCumulative score.
class	PermuteZScore<T extends FeatureInputDictionary>	Permutes a feature by embedding it in a ZScore.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.feature.bean.object.combine

Methods in org.anchoranalysis.plugin.image.feature.bean.object.combine that return types with arguments of type FeatureListProvider

Modifier and Type	Method	Description
List<NamedBean<FeatureListProvider<FeatureInputStack>>>	PairNeighbors.getFeaturesImage()	Additional features that only depend on the image, so do not need to be replicated for every object.
List<NamedBean<FeatureListProvider<FeatureInputPairObjects>>>	PairNeighbors.getFeaturesPair()	Additional features that are processed on the pair of images (i.e.

Method parameters in org.anchoranalysis.plugin.image.feature.bean.object.combine with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
abstract FeatureTableCalculator<T>	CombineObjectsForFeatures.createFeatures(List<NamedBean<FeatureListProvider<FeatureInputSingleObject>>> featuresSingleObject, NamedFeatureStoreFactory storeFactory, boolean suppressErrors)	Creates features that will be applied on the objects.
FeatureTableCalculator<FeatureInputSingleObject>	EachObjectIndependently.createFeatures(List<NamedBean<FeatureListProvider<FeatureInputSingleObject>>> list, NamedFeatureStoreFactory storeFactory, boolean suppressErrors)
FeatureTableCalculator<FeatureInputPairObjects>	PairNeighbors.createFeatures(List<NamedBean<FeatureListProvider<FeatureInputSingleObject>>> list, NamedFeatureStoreFactory storeFactory, boolean suppressErrors)
void	PairNeighbors.setFeaturesImage(List<NamedBean<FeatureListProvider<FeatureInputStack>>> featuresImage)	Additional features that only depend on the image, so do not need to be replicated for every object.
void	PairNeighbors.setFeaturesPair(List<NamedBean<FeatureListProvider<FeatureInputPairObjects>>> featuresPair)	Additional features that are processed on the pair of images (i.e.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.task.bean.feature

Methods in org.anchoranalysis.plugin.image.task.bean.feature that return types with arguments of type FeatureListProvider

Modifier and Type	Method	Description
List<NamedBean<FeatureListProvider<U>>>	ExportFeatures.getFeatures()	The features to be exported (after possibly some manipulation or augmentation).
List<NamedBean<FeatureListProvider<FeatureInputResults>>>	ExportFeatures.getFeaturesAggregate()	Features applied to each group to aggregate values (accepting FeatureInputResults).

Method parameters in org.anchoranalysis.plugin.image.task.bean.feature with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
void	ExportFeatures.setFeatures(List<NamedBean<FeatureListProvider<U>>> features)	The features to be exported (after possibly some manipulation or augmentation).
void	ExportFeatures.setFeaturesAggregate(List<NamedBean<FeatureListProvider<FeatureInputResults>>> featuresAggregate)	Features applied to each group to aggregate values (accepting FeatureInputResults).

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.task.bean.feature.source

Method parameters in org.anchoranalysis.plugin.image.task.bean.feature.source with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
abstract FeatureExporter<S>	FeatureSource.createExporter(LabelHeaders metadataHeaders, List<NamedBean<FeatureListProvider<U>>> features, FeatureOutputNames outputNames, Optional<InputGrouper> grouper, FeatureExporterContext context)	Creates the FeatureExporter to be used for calculating and exporting feature-results.
FeatureExporter<FeatureList<S>>	SingleRowPerInput.createExporter(LabelHeaders metadataHeaders, List<NamedBean<FeatureListProvider<S>>> features, FeatureOutputNames outputNames, Optional<InputGrouper> grouper, FeatureExporterContext context)

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.task.bean.labeller

Methods in org.anchoranalysis.plugin.image.task.bean.labeller that return FeatureListProvider

Modifier and Type	Method	Description
FeatureListProvider<FeatureInputStack>	BinaryClassifierImageLabeller.getClassifierProvider()	Provider for the classifier feature list.

Methods in org.anchoranalysis.plugin.image.task.bean.labeller that return types with arguments of type FeatureListProvider

Modifier and Type	Method	Description
List<NamedBean<FeatureListProvider<FeatureInputStack>>>	BinaryClassifierImageLabeller.getListFeatures()	List of named feature list providers for additional features.

Methods in org.anchoranalysis.plugin.image.task.bean.labeller with parameters of type FeatureListProvider

Modifier and Type	Method	Description
void	BinaryClassifierImageLabeller.setClassifierProvider(FeatureListProvider<FeatureInputStack> classifierProvider)	Provider for the classifier feature list.

Method parameters in org.anchoranalysis.plugin.image.task.bean.labeller with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
void	BinaryClassifierImageLabeller.setListFeatures(List<NamedBean<FeatureListProvider<FeatureInputStack>>> listFeatures)	List of named feature list providers for additional features.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.task.bean.segment

Methods in org.anchoranalysis.plugin.image.task.bean.segment that return types with arguments of type FeatureListProvider

Modifier and Type	Method	Description
List<NamedBean<FeatureListProvider<FeatureInputSingleObject>>>	SegmentInstanceWithModel.getFeatures()	Features to calculate for objects in the features output.

Method parameters in org.anchoranalysis.plugin.image.task.bean.segment with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
void	SegmentInstanceWithModel.setFeatures(List<NamedBean<FeatureListProvider<FeatureInputSingleObject>>> features)	Features to calculate for objects in the features output.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.task.bean.slice

Methods in org.anchoranalysis.plugin.image.task.bean.slice that return FeatureListProvider

Modifier and Type	Method	Description
FeatureListProvider<FeatureInputStack>	ExtractSlice.getScoreProvider()

Methods in org.anchoranalysis.plugin.image.task.bean.slice with parameters of type FeatureListProvider

Modifier and Type	Method	Description
void	ExtractSlice.setScoreProvider(FeatureListProvider<FeatureInputStack> scoreProvider)

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.task.feature

Method parameters in org.anchoranalysis.plugin.image.task.feature with type arguments of type FeatureListProvider

Modifier and Type	Method	Description
static <T extends FeatureInput> FeatureExporter<FeatureList<T>>	FeatureExporter.create(List<NamedBean<FeatureListProvider<T>>> features, LabelHeaders metadataHeaders, FeatureOutputNames outputNames, Optional<InputGrouper> grouper, FeatureExporterContext context)	Alternative static constructor that creates a shared-state from a list of named FeatureListProviders.

Uses of FeatureListProvider in org.anchoranalysis.plugin.image.task.feature.calculator

Methods in org.anchoranalysis.plugin.image.task.feature.calculator with parameters of type FeatureListProvider

Modifier and Type	Method	Description
FeatureCalculatorSingle<T>	FeatureCalculatorFromProvider.calculatorSingleFromProvider(FeatureListProvider<T> provider, String providerName)	Calculates a single-feature that comes from a provider (but can reference the other features from the store).

Uses of FeatureListProvider in org.anchoranalysis.plugin.opencv.bean.feature

Subclasses of FeatureListProvider in org.anchoranalysis.plugin.opencv.bean.feature

Modifier and Type	Class	Description
class	HOGDescriptor	Creates the entire HOG descriptor for an image.

Uses of FeatureListProvider in org.anchoranalysis.test.feature.plugins

Methods in org.anchoranalysis.test.feature.plugins that return types with arguments of type FeatureListProvider

Modifier and Type	Method	Description
static <T extends FeatureInput> List<NamedBean<FeatureListProvider<T>>>	FeaturesFromXMLFixture.createNamedFeatureProviders(String xmlPath, TestLoader loader)	Creates a list of named feature list providers from an XML file.