Package | Description |
---|---|
org.anchoranalysis.image.bean.threshold |
Base classes for thresholding and calculating levels for thresholding.
|
org.anchoranalysis.plugin.image.bean.channel.provider.object |
Implementations of
ChannelProvider that involve
conversion from or application of ObjectMask s. |
org.anchoranalysis.plugin.image.bean.histogram.provider |
Implementations of
HistogramProvider . |
org.anchoranalysis.plugin.image.bean.histogram.threshold |
Thresholding of intensity values represented in at
Histogram . |
org.anchoranalysis.plugin.image.feature.bean.histogram.threshold |
Implementations of
FeatureHistogram that perform
thresholding. |
org.anchoranalysis.plugin.image.feature.bean.score |
Implementations of
VoxelScore . |
org.anchoranalysis.plugin.image.intensity |
Non-bean for operations or calculations relating to intensity.
|
org.anchoranalysis.plugin.image.intensity.level |
Non-beans for calculating a thresholding level from itensity values.
|
Modifier and Type | Class and Description |
---|---|
class |
CalculateLevelUnary
Implementation of
CalculateLevel that calls a single delegate CalculateLevel . |
Modifier and Type | Method and Description |
---|---|
CalculateLevel |
CalculateLevelUnary.getCalculateLevel()
The delegate
CalculateLevel . |
CalculateLevel |
ThresholderGlobal.getCalculateLevel() |
Modifier and Type | Method and Description |
---|---|
void |
CalculateLevelUnary.setCalculateLevel(CalculateLevel calculateLevel)
The delegate
CalculateLevel . |
void |
ThresholderGlobal.setCalculateLevel(CalculateLevel calculateLevel) |
Constructor and Description |
---|
ThresholderGlobal(CalculateLevel calculateLevel) |
Modifier and Type | Method and Description |
---|---|
CalculateLevel |
LevelPerObjectBase.getCalculateLevel()
Method to calculate the level for a particular object.
|
Modifier and Type | Method and Description |
---|---|
void |
LevelPerObjectBase.setCalculateLevel(CalculateLevel calculateLevel)
Method to calculate the level for a particular object.
|
Modifier and Type | Method and Description |
---|---|
CalculateLevel |
GreaterThanThreshold.getCalculateLevel()
Calculates the level for the threshold
|
Modifier and Type | Method and Description |
---|---|
void |
GreaterThanThreshold.setCalculateLevel(CalculateLevel calculateLevel)
Calculates the level for the threshold
|
Modifier and Type | Class and Description |
---|---|
class |
CalculateLevelListBase |
class |
CalculateLevelRelativeToThreshold |
class |
ClampHistogramMax
Clamps the input-histogram to a certain maximum value, and then delegates the calculate-level.
|
class |
Constant
A constant value for thresholding.
|
class |
EmptyHistogramConstant
Specifies a constant if a histogram is empty, otherwise delegates to another {#link
org.anchoranalysis.image.bean.threshold.CalculateLevel}
|
class |
IfGreaterThan
Calculates a level from the first delegate and if greater than a threshold, recalculates from a
second delegate.
|
class |
IfLessThan
Calculates a level from the first delegate and if less than a threshold, recalculates from a
second delegate.
|
class |
Maximum
The maximum value of one or more {#link org.anchoranalysis.image.bean.threshold.CalculateLevel}
|
class |
Minimum
The minimum value of one or more {#link org.anchoranalysis.image.bean.threshold.CalculateLevel}
|
class |
Otsu
Performs auto-thresholding using Otsu's method.
|
class |
OtsuWeighted
Similar to Otsu, but weighs the variances differently of background and foreground.
|
class |
Quantile
Calculates the threshold value from a quantile of a histogram.
|
Modifier and Type | Method and Description |
---|---|
CalculateLevel |
CalculateLevelRelativeToThreshold.getCalculateLevelElse() |
Modifier and Type | Method and Description |
---|---|
List<CalculateLevel> |
CalculateLevelListBase.getList() |
Modifier and Type | Method and Description |
---|---|
void |
CalculateLevelRelativeToThreshold.setCalculateLevelElse(CalculateLevel calculateLevelElse) |
Modifier and Type | Method and Description |
---|---|
void |
CalculateLevelListBase.setList(List<CalculateLevel> list) |
Modifier and Type | Method and Description |
---|---|
CalculateLevel |
LevelFromHistogram.getCalculateLevel() |
CalculateLevel |
ThresholdHistogram.getCalculateLevel() |
Modifier and Type | Method and Description |
---|---|
void |
LevelFromHistogram.setCalculateLevel(CalculateLevel calculateLevel) |
void |
ThresholdHistogram.setCalculateLevel(CalculateLevel calculateLevel) |
Modifier and Type | Method and Description |
---|---|
CalculateLevel |
CalculateLevelBase.getCalculateLevel() |
Modifier and Type | Method and Description |
---|---|
void |
CalculateLevelBase.setCalculateLevel(CalculateLevel calculateLevel) |
Modifier and Type | Method and Description |
---|---|
static Histogram |
HistogramThresholder.withCalculateLevel(Histogram histogram,
CalculateLevel calculateLevel)
Retains the portion of the histogram greater or equal to the calculated-level.
|
Modifier and Type | Method and Description |
---|---|
static LevelResultCollection |
LevelResultCollectionFactory.createCollection(Channel channel,
ObjectCollection objects,
CalculateLevel calculateLevel,
int numDilations,
MessageLogger logger) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.