Uses of Class
org.anchoranalysis.image.bean.threshold.CalculateLevel

Packages that use CalculateLevel

Package	Description
org.anchoranalysis.image.bean.threshold	Base classes for thresholding and calculating levels for thresholding.
org.anchoranalysis.plugin.image.bean.channel.provider.object	Implementations of ChannelProvider that involve conversion from or application of ObjectMasks.
org.anchoranalysis.plugin.image.bean.histogram.provider	Implementations of HistogramProvider.
org.anchoranalysis.plugin.image.bean.histogram.threshold	Thresholding of intensity values represented in at Histogram.
org.anchoranalysis.plugin.image.feature.bean.histogram.threshold	Implementations of FeatureHistogram that perform thresholding.
org.anchoranalysis.plugin.image.feature.bean.score	Implementations of VoxelScore.
org.anchoranalysis.plugin.image.intensity	Non-bean for operations or calculations relating to intensity.
org.anchoranalysis.plugin.image.intensity.level	Non-beans for calculating a thresholding level from itensity values.

Uses of CalculateLevel in org.anchoranalysis.image.bean.threshold

Subclasses of CalculateLevel in org.anchoranalysis.image.bean.threshold

Modifier and Type	Class	Description
class	CalculateLevelUnary	Implementation of CalculateLevel that calls a single delegate CalculateLevel.

Methods in org.anchoranalysis.image.bean.threshold that return CalculateLevel

Modifier and Type	Method	Description
CalculateLevel	CalculateLevelUnary.getCalculateLevel()	The delegate CalculateLevel.
CalculateLevel	ThresholderGlobal.getCalculateLevel()

Methods in org.anchoranalysis.image.bean.threshold with parameters of type CalculateLevel

Modifier and Type	Method	Description
void	CalculateLevelUnary.setCalculateLevel(CalculateLevel calculateLevel)	The delegate CalculateLevel.
void	ThresholderGlobal.setCalculateLevel(CalculateLevel calculateLevel)

Constructors in org.anchoranalysis.image.bean.threshold with parameters of type CalculateLevel

Modifier	Constructor	Description
	ThresholderGlobal(CalculateLevel calculateLevel)

Uses of CalculateLevel in org.anchoranalysis.plugin.image.bean.channel.provider.object

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.object that return CalculateLevel

Modifier and Type	Method	Description
CalculateLevel	LevelPerObjectBase.getCalculateLevel()	Method to calculate the level for a particular object.

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.object with parameters of type CalculateLevel

Modifier and Type	Method	Description
void	LevelPerObjectBase.setCalculateLevel(CalculateLevel calculateLevel)	Method to calculate the level for a particular object.

Uses of CalculateLevel in org.anchoranalysis.plugin.image.bean.histogram.provider

Methods in org.anchoranalysis.plugin.image.bean.histogram.provider that return CalculateLevel

Modifier and Type	Method	Description
CalculateLevel	GreaterThanThreshold.getCalculateLevel()	Calculates the level for the threshold

Methods in org.anchoranalysis.plugin.image.bean.histogram.provider with parameters of type CalculateLevel

Modifier and Type	Method	Description
void	GreaterThanThreshold.setCalculateLevel(CalculateLevel calculateLevel)	Calculates the level for the threshold

Uses of CalculateLevel in org.anchoranalysis.plugin.image.bean.histogram.threshold

Subclasses of CalculateLevel in org.anchoranalysis.plugin.image.bean.histogram.threshold

Modifier and Type	Class	Description
class	CalculateLevelListBase	Base class for CalculateLevel implementations that operate on a list of other CalculateLevel objects.
class	CalculateLevelRelativeToThreshold	A CalculateLevelUnary that calculates a level relative to a threshold, with an alternative calculation method.
class	ClampHistogramMax	Clamps the input-histogram to a certain maximum value, and then delegates the calculate-level.
class	Constant	A constant value for thresholding.
class	EmptyHistogramConstant	Specifies a constant if a histogram is empty, otherwise delegates to another {#link org.anchoranalysis.image.bean.threshold.CalculateLevel}
class	IfGreaterThan	Calculates a level from the first delegate and if greater than a threshold, recalculates from a second delegate.
class	IfLessThan	Calculates a level from the first delegate and if less than a threshold, recalculates from a second delegate.
class	Maximum	The maximum value of one or more {#link org.anchoranalysis.image.bean.threshold.CalculateLevel}
class	Minimum	The minimum value of one or more {#link org.anchoranalysis.image.bean.threshold.CalculateLevel}
class	Otsu	Performs auto-thresholding using Otsu's method.
class	OtsuWeighted	Similar to Otsu, but weighs the variances differently of background and foreground.
class	Quantile	Calculates the threshold value from a quantile of a histogram.

Methods in org.anchoranalysis.plugin.image.bean.histogram.threshold that return CalculateLevel

Modifier and Type	Method	Description
CalculateLevel	CalculateLevelRelativeToThreshold.getCalculateLevelElse()	Alternative CalculateLevel to use when the condition in CalculateLevelRelativeToThreshold.useElseInstead(int, int) is met.

Methods in org.anchoranalysis.plugin.image.bean.histogram.threshold that return types with arguments of type CalculateLevel

Modifier and Type	Method	Description
List<CalculateLevel>	CalculateLevelListBase.getList()	List of CalculateLevel objects to be used in the calculation.

Methods in org.anchoranalysis.plugin.image.bean.histogram.threshold with parameters of type CalculateLevel

Modifier and Type	Method	Description
void	CalculateLevelRelativeToThreshold.setCalculateLevelElse(CalculateLevel calculateLevelElse)	Alternative CalculateLevel to use when the condition in CalculateLevelRelativeToThreshold.useElseInstead(int, int) is met.

Method parameters in org.anchoranalysis.plugin.image.bean.histogram.threshold with type arguments of type CalculateLevel

Modifier and Type	Method	Description
void	CalculateLevelListBase.setList(List<CalculateLevel> list)	List of CalculateLevel objects to be used in the calculation.

Uses of CalculateLevel in org.anchoranalysis.plugin.image.feature.bean.histogram.threshold

Methods in org.anchoranalysis.plugin.image.feature.bean.histogram.threshold that return CalculateLevel

Modifier and Type	Method	Description
CalculateLevel	LevelFromHistogram.getCalculateLevel()
CalculateLevel	ThresholdHistogram.getCalculateLevel()

Methods in org.anchoranalysis.plugin.image.feature.bean.histogram.threshold with parameters of type CalculateLevel

Modifier and Type	Method	Description
void	LevelFromHistogram.setCalculateLevel(CalculateLevel calculateLevel)
void	ThresholdHistogram.setCalculateLevel(CalculateLevel calculateLevel)

Uses of CalculateLevel in org.anchoranalysis.plugin.image.feature.bean.score

Methods in org.anchoranalysis.plugin.image.feature.bean.score that return CalculateLevel

Modifier and Type	Method	Description
CalculateLevel	CalculateLevelBase.getCalculateLevel()	The method to calculate the threshold level.

Methods in org.anchoranalysis.plugin.image.feature.bean.score with parameters of type CalculateLevel

Modifier and Type	Method	Description
void	CalculateLevelBase.setCalculateLevel(CalculateLevel calculateLevel)	The method to calculate the threshold level.

Uses of CalculateLevel in org.anchoranalysis.plugin.image.intensity

Methods in org.anchoranalysis.plugin.image.intensity with parameters of type CalculateLevel

Modifier and Type	Method	Description
static Histogram	HistogramThresholder.withCalculateLevel(Histogram histogram, CalculateLevel calculateLevel)	Retains the portion of the histogram greater or equal to the calculated-level.

Uses of CalculateLevel in org.anchoranalysis.plugin.image.intensity.level

Methods in org.anchoranalysis.plugin.image.intensity.level with parameters of type CalculateLevel

Modifier and Type	Method	Description
static LevelResultCollection	LevelResultCollectionFactory.createCollection(Channel channel, ObjectCollection objects, CalculateLevel calculateLevel, int numberDilations, MessageLogger logger)	Creates a LevelResultCollection from a channel and object collection.