org.anchoranalysis.plugin.image.bean.channel.provider.object

Class LevelPerObjectBase

Object

AnchorBean<B>

InitializableBean<T,ImageInitialization>

ImageBean<T>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

LevelPerObjectBase

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

Direct Known Subclasses:

LevelPerObjectIndependently, LevelPerObjectNeighbors

public abstract class LevelPerObjectBase
extends ChannelProviderUnary

Creates a channel with a level calculated for each object variously

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor and Description
LevelPerObjectBase()

Method Summary

Modifier and Type	Method and Description
Channel	createFromChannel(Channel channel) Creates a Channel given the entity provided by the delegate.
CalculateLevel	getCalculateLevel() Method to calculate the level for a particular object.
ObjectCollectionProvider	getObjects() The objects for whom a level is calculated
void	setCalculateLevel(CalculateLevel calculateLevel) Method to calculate the level for a particular object.
void	setObjects(ObjectCollectionProvider objects) The objects for whom a level is calculated
protected abstract void	writeLevelsForObjects(Channel input, ObjectCollection objects, Channel output) Creates a channel with the levels for a set of objects

Methods inherited from class ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class ChannelProvider

getAsStack

Methods inherited from class InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

LevelPerObjectBase

public LevelPerObjectBase()

Method Detail

createFromChannel

public Channel createFromChannel(Channel channel)
                          throws ProvisionFailedException

Description copied from class: ChannelProviderUnary

Creates a Channel given the entity provided by the delegate.

Specified by:

createFromChannel in class ChannelProviderUnary

Parameters:

channel - the entity provided by the delegate.

Returns:

the created Channel that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

writeLevelsForObjects

protected abstract void writeLevelsForObjects(Channel input,
                                              ObjectCollection objects,
                                              Channel output)
                                       throws ProvisionFailedException

Creates a channel with the levels for a set of objects

Parameters:

input - the channel whose intensity is passed to calculateLevel as a histogram variously for particular objects

objects - the objects

output - the channel where the calculated-levels are written (for each object)

Throws:

ProvisionFailedException

getObjects

public ObjectCollectionProvider getObjects()

The objects for whom a level is calculated

setObjects

public void setObjects(ObjectCollectionProvider objects)

The objects for whom a level is calculated

getCalculateLevel

public CalculateLevel getCalculateLevel()

Method to calculate the level for a particular object. It is passed a histogram (calculated in different ways) for each object

setCalculateLevel

public void setCalculateLevel(CalculateLevel calculateLevel)

Method to calculate the level for a particular object. It is passed a histogram (calculated in different ways) for each object