Package org.anchoranalysis.plugin.image.bean.channel.provider.object

Class LevelPerObjectBase

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

LevelPerObjectBase

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

Direct Known Subclasses:

LevelPerObjectIndependently, LevelPerObjectNeighbors

public abstract class LevelPerObjectBase
extends ChannelProviderUnary

Creates a channel with a level calculated for each object using various methods.

This abstract class provides a base for creating channels where each object is assigned a specific intensity level based on calculations performed on the input channel.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
LevelPerObjectBase()

Method Summary

Modifier and Type	Method	Description
Channel	createFromChannel(Channel channel)	Creates a Channel given the entity provided by the delegate.
CalculateLevel	getCalculateLevel()	Method to calculate the level for a particular object.
ObjectCollectionProvider	getObjects()	The objects for whom a level is calculated.
void	setCalculateLevel(CalculateLevel calculateLevel)	Method to calculate the level for a particular object.
void	setObjects(ObjectCollectionProvider objects)	The objects for whom a level is calculated.
protected abstract void	writeLevelsForObjects(Channel input, ObjectCollection objects, Channel output)	Creates a channel with the levels for a set of objects.

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

LevelPerObjectBase

public LevelPerObjectBase()

Method Details

createFromChannel

public Channel createFromChannel(Channel channel)
                          throws ProvisionFailedException

Description copied from class: ChannelProviderUnary

Creates a Channel given the entity provided by the delegate.

Specified by:

createFromChannel in class ChannelProviderUnary

Parameters:

channel - the entity provided by the delegate.

Returns:

the created Channel that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

writeLevelsForObjects

protected abstract void writeLevelsForObjects(Channel input,
 ObjectCollection objects,
 Channel output)
                                       throws ProvisionFailedException

Creates a channel with the levels for a set of objects.

Parameters:

input - the channel whose intensity is passed to calculateLevel as a histogram variously for particular objects

objects - the ObjectCollection for which levels are calculated

output - the channel where the calculated-levels are written (for each object)

Throws:

ProvisionFailedException - if there's an error during the level calculation or writing process

getObjects

public ObjectCollectionProvider getObjects()

The objects for whom a level is calculated.

setObjects

public void setObjects(ObjectCollectionProvider objects)

The objects for whom a level is calculated.

getCalculateLevel

public CalculateLevel getCalculateLevel()

Method to calculate the level for a particular object.

It is passed a histogram (calculated in different ways) for each object.

setCalculateLevel

public void setCalculateLevel(CalculateLevel calculateLevel)

Method to calculate the level for a particular object.

It is passed a histogram (calculated in different ways) for each object.