Uses of Interface
org.anchoranalysis.image.io.stack.input.ProvidesStackInput

Packages that use ProvidesStackInput

Package	Description
org.anchoranalysis.annotation.io	Reading and writing annotations to the filesystem.
org.anchoranalysis.annotation.io.bean	Beans related to reading / writing / specifying annotations.
org.anchoranalysis.image.io.channel.input	Non-bean classes for reading a Channel from the filesystem.
org.anchoranalysis.image.io.stack.input	Non-bean classes for reading a Stack from the filesystem.
org.anchoranalysis.mpp.io.bean.input	Beans for reading data structures related to marked point processes from the file system.
org.anchoranalysis.mpp.io.input	Non-beans for reading data structures related to marked point processes from the file system.
org.anchoranalysis.plugin.annotation.bean.comparison	Task to compare a set of annotations to a segmentation or another set of annotations.
org.anchoranalysis.plugin.annotation.bean.strategy	Strategies for how to annotate an image, such label per image etc.
org.anchoranalysis.plugin.image.task.bean.feature.source	Source of rows in feature-tables with FeatureSource and derived classes.
org.anchoranalysis.plugin.image.task.bean.grouped	Tasks that involved stacks (usually each channel from an image) that are somehow grouped-together.
org.anchoranalysis.plugin.image.task.bean.labeller	Associating labels with images.
org.anchoranalysis.plugin.image.task.feature.calculator	Non-beans for calculating Features.
org.anchoranalysis.plugin.image.task.labeller	Non-bean classes about labelling images.
org.anchoranalysis.plugin.image.task.stack	Non-bean classes pertaining to stacks and channels as used in tasks.
org.anchoranalysis.plugin.io.bean.input.stack	Implementations of InputManager that process Stacks.

Uses of ProvidesStackInput in org.anchoranalysis.annotation.io

Constructors in org.anchoranalysis.annotation.io with parameters of type ProvidesStackInput

Modifier	Constructor	Description
	AnnotationWithStrategy(ProvidesStackInput input, T strategy)	Creates for a particular input and associated annotation strategy.

Uses of ProvidesStackInput in org.anchoranalysis.annotation.io.bean

Classes in org.anchoranalysis.annotation.io.bean with type parameters of type ProvidesStackInput

Modifier and Type	Class	Description
class	AnnotationInputManager<T extends ProvidesStackInput,S extends AnnotatorStrategy>	An InputManager that provides annotations corresponding to images.

Methods in org.anchoranalysis.annotation.io.bean with parameters of type ProvidesStackInput

Modifier and Type	Method	Description
abstract Optional<String>	AnnotatorStrategy.annotationLabelFor(ProvidesStackInput input, OperationContext context)	A human-friendly textual description of the annotation, or Optional.empty() if no label is available.
abstract Path	AnnotatorStrategy.pathFor(ProvidesStackInput input)	The path to where an annotation file for a particular input would be located.

Uses of ProvidesStackInput in org.anchoranalysis.image.io.channel.input

Classes in org.anchoranalysis.image.io.channel.input that implement ProvidesStackInput

Modifier and Type	Class	Description
class	NamedChannelsInput	Provides a set of channels as an input, with each channel having a name.
class	NamedChannelsInputPart	One part of a NamedChannelsInput that can be combined with others.

Uses of ProvidesStackInput in org.anchoranalysis.image.io.stack.input

Subinterfaces of ProvidesStackInput in org.anchoranalysis.image.io.stack.input

Modifier and Type	Interface	Description
interface	StackSequenceInput	Provides a single stack (or a time series of such stacks) as an input

Uses of ProvidesStackInput in org.anchoranalysis.mpp.io.bean.input

Methods in org.anchoranalysis.mpp.io.bean.input that return types with arguments of type ProvidesStackInput

Modifier and Type	Method	Description
InputManager<? extends ProvidesStackInput>	MultiInputManager.getInput()	The input manager for the main stack.

Method parameters in org.anchoranalysis.mpp.io.bean.input with type arguments of type ProvidesStackInput

Modifier and Type	Method	Description
void	MultiInputManager.setInput(InputManager<? extends ProvidesStackInput> input)	The input manager for the main stack.

Constructor parameters in org.anchoranalysis.mpp.io.bean.input with type arguments of type ProvidesStackInput

Modifier	Constructor	Description
	MultiInputManager(String inputName, InputManager<? extends ProvidesStackInput> input)	Creates a new MultiInputManager with specified input name and input manager.

Uses of ProvidesStackInput in org.anchoranalysis.mpp.io.input

Classes in org.anchoranalysis.mpp.io.input that implement ProvidesStackInput

Modifier and Type	Class	Description
class	MultiInput	An input to an experiment that combines a particular Stack with other types of entities.

Constructors in org.anchoranalysis.mpp.io.input with parameters of type ProvidesStackInput

Modifier	Constructor	Description
	MultiInput(String mainObjectName, ProvidesStackInput mainInputObject)	Creates a new MultiInput with a specified name for the main input object.
	MultiInput(ProvidesStackInput mainInputObject)	Creates a new MultiInput with a default name for the main input object.
	StackWithMap(String mainObjectName, ProvidesStackInput mainInputObject)	Creates a new StackWithMap instance.

Uses of ProvidesStackInput in org.anchoranalysis.plugin.annotation.bean.comparison

Method parameters in org.anchoranalysis.plugin.annotation.bean.comparison with type arguments of type ProvidesStackInput

Modifier and Type	Method	Description
ComparisonSharedState<T>	CompareAnnotations.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<AnnotationComparisonInput<ProvidesStackInput>> inputs, ParametersExperiment parameters)
void	CompareAnnotations.doJobOnInput(InputBound<AnnotationComparisonInput<ProvidesStackInput>,ComparisonSharedState<T>> input)

Uses of ProvidesStackInput in org.anchoranalysis.plugin.annotation.bean.strategy

Methods in org.anchoranalysis.plugin.annotation.bean.strategy with parameters of type ProvidesStackInput

Modifier and Type	Method	Description
Optional<String>	ImageLabelStrategy.annotationLabelFor(ProvidesStackInput item, OperationContext context)
Optional<String>	MarkProposerStrategy.annotationLabelFor(ProvidesStackInput item, OperationContext operationContext)
Path	SinglePathStrategy.pathFor(ProvidesStackInput input)

Uses of ProvidesStackInput in org.anchoranalysis.plugin.image.task.bean.feature.source

Methods in org.anchoranalysis.plugin.image.task.bean.feature.source with parameters of type ProvidesStackInput

Modifier and Type	Method	Description
protected Optional<String[]>	FromImage.additionalLabelsFor(ProvidesStackInput input)
protected ResultsVectorWithThumbnail	FromImage.calculateResultsForInput(ProvidesStackInput input, FeatureCalculationContext<FeatureList<FeatureInputStack>> context)

Uses of ProvidesStackInput in org.anchoranalysis.plugin.image.task.bean.grouped

Method parameters in org.anchoranalysis.plugin.image.task.bean.grouped with type arguments of type ProvidesStackInput

Modifier and Type	Method	Description
GroupedSharedState<S,T>	GroupedStackBase.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<ProvidesStackInput> inputs, ParametersExperiment parameters)
void	GroupedStackBase.doJobOnInput(InputBound<ProvidesStackInput,GroupedSharedState<S,T>> input)

Uses of ProvidesStackInput in org.anchoranalysis.plugin.image.task.bean.labeller

Methods in org.anchoranalysis.plugin.image.task.bean.labeller with parameters of type ProvidesStackInput

Modifier and Type	Method	Description
String	BinaryClassifierImageLabeller.labelFor(NoSharedState sharedState, ProvidesStackInput input, InputOutputContext context)	Determines the label for a given input image.
String	DescriptiveNameContainsImageLabeller.labelFor(NoSharedState sharedState, ProvidesStackInput input, InputOutputContext context)
String	ImageCSVLabeller.labelFor(ImageCSVLabellerInitialization sharedState, ProvidesStackInput input, InputOutputContext context)
abstract String	ImageLabeller.labelFor(T sharedState, ProvidesStackInput input, InputOutputContext context)	Determines a particular group-identifier (label) for an input.
String	ImageLabellerStringMap.labelFor(ImageLabellerStringMapInitialization<T> sharedState, ProvidesStackInput input, InputOutputContext context)

Method parameters in org.anchoranalysis.plugin.image.task.bean.labeller with type arguments of type ProvidesStackInput

Modifier and Type	Method	Description
SharedStateFilteredImageOutput<T>	ImageAssignLabel.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<ProvidesStackInput> inputs, ParametersExperiment parameters)
void	ImageAssignLabel.doJobOnInput(InputBound<ProvidesStackInput,SharedStateFilteredImageOutput<T>> input)

Uses of ProvidesStackInput in org.anchoranalysis.plugin.image.task.feature.calculator

Methods in org.anchoranalysis.plugin.image.task.feature.calculator with parameters of type ProvidesStackInput

Modifier and Type	Method	Description
static EnergyStack	FeatureCalculatorRepeated.extractStack(ProvidesStackInput input, StackProvider stackEnergy, InputOutputContext context)	Extracts an EnergyStack from the given input and stack provider.

Constructors in org.anchoranalysis.plugin.image.task.feature.calculator with parameters of type ProvidesStackInput

Modifier	Constructor	Description
	FeatureCalculatorFromProvider(ProvidesStackInput stackInput, Optional<StackProvider> stackEnergy, InputOutputContext context)	Creates a new FeatureCalculatorFromProvider.

Uses of ProvidesStackInput in org.anchoranalysis.plugin.image.task.labeller

Methods in org.anchoranalysis.plugin.image.task.labeller with parameters of type ProvidesStackInput

Modifier and Type	Method	Description
String	SharedStateFilteredImageOutput.labelFor(ProvidesStackInput input, InputOutputContext context)	Determines a particular group-identifier for an input.

Uses of ProvidesStackInput in org.anchoranalysis.plugin.image.task.stack

Methods in org.anchoranalysis.plugin.image.task.stack with parameters of type ProvidesStackInput

Modifier and Type	Method	Description
static ImageInitialization	InitializationFactory.createWithStacks(ProvidesStackInput input, InitializationContext context)	Creates an ImageInitialization with stacks added from the input.

Uses of ProvidesStackInput in org.anchoranalysis.plugin.io.bean.input.stack

Classes in org.anchoranalysis.plugin.io.bean.input.stack that implement ProvidesStackInput

Modifier and Type	Class	Description
class	ConvertNamedChannelsInputToStack	An input object that converts NamedChannelsInput to StackSequenceInput.