Uses of Class
org.anchoranalysis.image.voxel.kernel.KernelApplicationParameters

Packages that use KernelApplicationParameters

Package	Description
org.anchoranalysis.image.voxel.iterator	Utilities to iterate over voxel-locations in images and sub-regions of images.
org.anchoranalysis.image.voxel.iterator.neighbor.kernel	Routines for moving a KernelPointCursor around the neighboring voxels of the point.
org.anchoranalysis.image.voxel.kernel	Applying a kernel via convolution to voxels.
org.anchoranalysis.image.voxel.kernel.morphological	Kernels that apply morphological operations.
org.anchoranalysis.plugin.image.feature.bean.object.pair.touching	Features that calculate how many other objects an ObjectMask directly neighbors.
org.anchoranalysis.plugin.image.feature.bean.object.single	Implementations of FeatureSingleObject.
org.anchoranalysis.plugin.image.feature.bean.object.single.border	Implementations of FeatureSingleObject that determine if an object lies at the border of an image.
org.anchoranalysis.plugin.image.feature.bean.object.single.energy	Implementations of FeatureSingleObject that reference a particular Channel in the associated EnergyStack.

Uses of KernelApplicationParameters in org.anchoranalysis.image.voxel.iterator

Methods in org.anchoranalysis.image.voxel.iterator with parameters of type KernelApplicationParameters

Modifier and Type	Method	Description
static void	IterateVoxelsAll.withCursor(BinaryVoxels<UnsignedByteBuffer> voxels, KernelApplicationParameters parameters, ProcessKernelPointCursor process)	Iterate over each voxel using a KernelPointCursor.
static void	IterateVoxelsBoundingBox.withCursor(BinaryVoxels<UnsignedByteBuffer> voxels, BoundingBox box, KernelApplicationParameters parameters, ProcessKernelPointCursor process)	Iterate over each voxel in a bounding-box using a KernelPointCursor.
static boolean	IterateVoxelsBoundingBox.withCursorUntil(BinaryVoxels<UnsignedByteBuffer> voxels, BoundingBox box, KernelApplicationParameters parameters, PredicateKernelPointCursor predicate)	Iterate over each voxel in a bounding-box using a KernelPointCursor until a predicate returns true..

Uses of KernelApplicationParameters in org.anchoranalysis.image.voxel.iterator.neighbor.kernel

Methods in org.anchoranalysis.image.voxel.iterator.neighbor.kernel with parameters of type KernelApplicationParameters

Modifier and Type	Method	Description
static void	IterateKernelHelper.overAll(Kernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, KernelApplicationParameters parameters, ProcessKernelPointCursor processor)	Iterates over all voxels.
static void	IterateKernelHelper.overBox(Kernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, BoundingBox box, KernelApplicationParameters parameters, ProcessKernelPointCursor processor)	Iterates over only voxels contained within a bounding-box.
static boolean	IterateKernelHelper.overBoxUntil(Kernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, BoundingBox box, KernelApplicationParameters parameters, PredicateKernelPointCursor predicate)	Iterates over only voxels contained within a bounding-box until a predicate is matched on a voxel.

Uses of KernelApplicationParameters in org.anchoranalysis.image.voxel.kernel

Methods in org.anchoranalysis.image.voxel.kernel with parameters of type KernelApplicationParameters

Modifier and Type	Method	Description
static BinaryVoxels<UnsignedByteBuffer>	ApplyKernel.apply(BinaryKernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, KernelApplicationParameters parameters)	Apply the kernel to BinaryVoxels<UnsignedByteBuffer> using the same binary-values as voxels to calculate a value for each voxel.
static int	ApplyKernel.applyForCount(BinaryKernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, KernelApplicationParameters parameters)	Applies a BinaryKernel to voxels and counts how many true values occur en aggregate.
static int	ApplyKernel.applyForCount(CountKernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, KernelApplicationParameters parameters)	Applies the kernel to voxels and sums the returned value.
static int	ApplyKernel.applyForCount(CountKernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, BoundingBox box, KernelApplicationParameters parameters)	Applies the kernel to voxels and sums the returned value.
static boolean	ApplyKernel.applyUntilPositive(CountKernel kernel, BinaryVoxels<UnsignedByteBuffer> voxels, BoundingBox box, KernelApplicationParameters parameters)	Applies the kernel to voxels until a positive value is returned, then exits with true.

Constructors in org.anchoranalysis.image.voxel.kernel with parameters of type KernelApplicationParameters

Modifier	Constructor	Description
	KernelPointCursor(int index, Point3i point, Extent extent, BinaryValuesByte binaryValues, KernelApplicationParameters parameters)	Creates to be focused around a particular point in the image.

Uses of KernelApplicationParameters in org.anchoranalysis.image.voxel.kernel.morphological

Methods in org.anchoranalysis.image.voxel.kernel.morphological that return KernelApplicationParameters

Modifier and Type	Method	Description
KernelApplicationParameters	DilationContext.getKernelApplication()	How the kernel is applied to the scene.

Uses of KernelApplicationParameters in org.anchoranalysis.plugin.image.feature.bean.object.pair.touching

Methods in org.anchoranalysis.plugin.image.feature.bean.object.pair.touching that return KernelApplicationParameters

Modifier and Type	Method	Description
protected KernelApplicationParameters	TouchingVoxels.createParameters()	Creates KernelApplicationParameters based on the current configuration.

Uses of KernelApplicationParameters in org.anchoranalysis.plugin.image.feature.bean.object.single

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single with parameters of type KernelApplicationParameters

Modifier and Type	Method	Description
protected abstract double	OutlineKernelBase.calculateWithParameters(ObjectMask object, KernelApplicationParameters parameters, CheckedSupplier<EnergyStack,FeatureCalculationException> energyStack)	Calculates the feature value using the specified parameters.

Uses of KernelApplicationParameters in org.anchoranalysis.plugin.image.feature.bean.object.single.border

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.border with parameters of type KernelApplicationParameters

Modifier and Type	Method	Description
protected double	NumberVoxelsAtBorder.calculateWithParameters(ObjectMask object, KernelApplicationParameters parameters, CheckedSupplier<EnergyStack,FeatureCalculationException> energyStack)
static int	NumberVoxelsAtBorder.numberBorderPixels(ObjectMask object, KernelApplicationParameters parameters)	Calculates the number of border voxels for a given object.

Uses of KernelApplicationParameters in org.anchoranalysis.plugin.image.feature.bean.object.single.energy

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.energy with parameters of type KernelApplicationParameters

Modifier and Type	Method	Description
protected double	NumberNeighboringVoxels.calculateWithParameters(ObjectMask object, KernelApplicationParameters parameters, CheckedSupplier<EnergyStack,FeatureCalculationException> energyStack)