Package org.anchoranalysis.io.bioformats

Class DimensionsCreator

Object

DimensionsCreator

public class DimensionsCreator
extends Object

Infers Dimensions for a particular image-file.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
DimensionsCreator(loci.formats.meta.IMetadata lociMetadata)

Method Summary

Modifier and Type	Method	Description
Dimensions	apply(loci.formats.IFormatReader reader, ReadOptions readOptions, int seriesIndex)	Infers the dimensions from an image file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DimensionsCreator

public DimensionsCreator(loci.formats.meta.IMetadata lociMetadata)

Method Details

apply

public Dimensions apply(loci.formats.IFormatReader reader,
 ReadOptions readOptions,
 int seriesIndex)
                 throws CreateException

Infers the dimensions from an image file.

Parameters:

reader - a bioformats reader that has opened the image-file.

readOptions - further specification of how to read the image file.

seriesIndex - which series to read (zero-indexed).

Returns:

newly created Dimensions.

Throws:

CreateException - if unable to infer dimensions from the image file.