Package org.anchoranalysis.io.bioformats.bean.options

Class ForceTimeSeriesToStack

Object

AnchorBean<ReadOptions>

ReadOptions

ReadOptionsDelegate

ForceTimeSeriesToStack

public class ForceTimeSeriesToStack
extends ReadOptionsDelegate

Treats a time-series as if it was a z-stack

Constructor Summary

Constructors

Constructor	Description
ForceTimeSeriesToStack()

Method Summary

Modifier and Type	Method	Description
boolean	isRGB(loci.formats.IFormatReader reader)	Is it an image with three channels (red, green and blue)?
int	sizeT(loci.formats.IFormatReader reader)	Number of time-points (frames in a time series).
int	sizeZ(loci.formats.IFormatReader reader)	Number of z-slices (slices in a 3D image).

Methods inherited from class org.anchoranalysis.io.bioformats.bean.options.ReadOptionsDelegate

channelsPerByteArray, delegate, determineChannelNames, effectiveBitsPerPixel, getOptions, setOptions, sizeC

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ForceTimeSeriesToStack

public ForceTimeSeriesToStack()

Method Details

sizeT

public int sizeT(loci.formats.IFormatReader reader)

Description copied from class: ReadOptions

Number of time-points (frames in a time series).

Overrides:

sizeT in class ReadOptionsDelegate

Parameters:

reader - the bioformats reader

Returns:

the number of channels

sizeZ

public int sizeZ(loci.formats.IFormatReader reader)

Description copied from class: ReadOptions

Number of z-slices (slices in a 3D image).

Overrides:

sizeZ in class ReadOptionsDelegate

Parameters:

reader - the bioformats reader

Returns:

the number of slices

isRGB

public boolean isRGB(loci.formats.IFormatReader reader)

Description copied from class: ReadOptions

Is it an image with three channels (red, green and blue)?

Overrides:

isRGB in class ReadOptionsDelegate

Parameters:

reader - the bioformats reader

Returns:

true iff its a RGB image