Package org.anchoranalysis.io.bioformats.bean.options

Class SwitchChannelTime

Object

AnchorBean<ReadOptions>

ReadOptions

ReadOptionsDelegate

SwitchChannelTime

public class SwitchChannelTime
extends ReadOptionsDelegate

Treats the channel index as if it's time, and vice versa

Constructor Summary

Constructors

Constructor	Description
SwitchChannelTime()

Method Summary

Modifier and Type	Method	Description
Optional<List<String>>	determineChannelNames(loci.formats.IFormatReader reader)	A list of channel-names, if available.
boolean	isRGB(loci.formats.IFormatReader reader)	Is it an image with three channels (red, green and blue)?

Methods inherited from class org.anchoranalysis.io.bioformats.bean.options.ReadOptionsDelegate

channelsPerByteArray, delegate, effectiveBitsPerPixel, getOptions, setOptions, sizeC, sizeT, sizeZ

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

SwitchChannelTime

public SwitchChannelTime()

Method Details

determineChannelNames

public Optional<List<String>> determineChannelNames(loci.formats.IFormatReader reader)

Description copied from class: ReadOptions

A list of channel-names, if available.

The order matches the channel indexing e.g. the first name in the list corresponds to the channel with index=0.

Overrides:

determineChannelNames in class ReadOptionsDelegate

Parameters:

reader - the bioformats reader

Returns:

the channel-names, if available.

isRGB

public boolean isRGB(loci.formats.IFormatReader reader)

Description copied from class: ReadOptions

Is it an image with three channels (red, green and blue)?

Overrides:

isRGB in class ReadOptionsDelegate

Parameters:

reader - the bioformats reader

Returns:

true iff its a RGB image