Package org.anchoranalysis.io.bioformats.copyconvert.tobyte

Class UnsignedByteFromUnsignedByteNoInterleavingScale

Object

ConvertTo<UnsignedByteBuffer>

ToUnsignedByte

ToUnsignedByteWithScaling

UnsignedByteFromUnsignedByteNoInterleavingScale

public class UnsignedByteFromUnsignedByteNoInterleavingScale
extends ToUnsignedByteWithScaling

Converts data of type unsigned byte to unsigned byte.

Scaling is always applied to map the range of effective-bits (how many bits are used) to an 8-bit range.

Computationally, it is preferable to use UnsignedByteFromUnsignedByteNoInterleaving if both source and destination are exactly 8-bit and unsigned.

Author:

Owen Feehan

Field Summary

Fields inherited from class org.anchoranalysis.io.bioformats.copyconvert.tobyte.ToUnsignedByteWithScaling

scaling

Fields inherited from class org.anchoranalysis.io.bioformats.copyconvert.ConvertTo

destinationSize, extent, sourceIncrement, sourceSize

Constructor Summary

Constructors

Constructor	Description
UnsignedByteFromUnsignedByteNoInterleavingScale(int effectiveBits)	Create with a number of effective-bits.

Method Summary

Modifier and Type	Method	Description
protected int	bytesPerVoxel()	The number bytes to describe each source-voxel.
protected int	extractScaledValue(byte[] sourceArray, int index, boolean littleEndian)	Extracts a value from the source-array, and apply any scaling and clamping.

Methods inherited from class org.anchoranalysis.io.bioformats.copyconvert.tobyte.ToUnsignedByteWithScaling

copyChangeOrientation, copyKeepOrientation, supportsMultipleChannelsPerSourceBuffer

Methods inherited from class org.anchoranalysis.io.bioformats.copyconvert.ConvertTo

convert, convertSliceOfSingleChannel, copyAllChannels, setupBefore

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

UnsignedByteFromUnsignedByteNoInterleavingScale

public UnsignedByteFromUnsignedByteNoInterleavingScale(int effectiveBits)

Create with a number of effective-bits.

Parameters:

effectiveBits - the number of bits that are used in the input-type e.g. 8 or 12 or 16.

Method Details

bytesPerVoxel

protected int bytesPerVoxel()

Description copied from class: ConvertTo

The number bytes to describe each source-voxel.

Specified by:

bytesPerVoxel in class ConvertTo<UnsignedByteBuffer>

Returns:

the number of bytes.

extractScaledValue

protected int extractScaledValue(byte[] sourceArray,
 int index,
 boolean littleEndian)

Description copied from class: ToUnsignedByteWithScaling

Extracts a value from the source-array, and apply any scaling and clamping.

Specified by:

extractScaledValue in class ToUnsignedByteWithScaling

Parameters:

sourceArray - the bytes from which some values are extracted.

index - the offset in sourceArray from which a value is read.

littleEndian - true iff the bytes in source are in little-endian order.

Returns:

the extracted value.