Uses of Package
org.anchoranalysis.io.input
Packages that use org.anchoranalysis.io.input
Package
Description
Reading and writing annotations to the filesystem.
Beans related to reading / writing / specifying annotations.
What to compare an annotation (ground truth) against?
Reading and writing whole-image label annotations.
Arguments that can further specify an experiment in addition to its bean specification.
Generic experiments that handle input and output in structured ways.
How a task is executed on multiple inputs.
Defines a task,
which is a set of operations run on an input, that may or may not generate an output.
Interfaces for replacing attributes of an experiment: input, output, task etc.
Non-bean classes related to a
Task.Non-bean classes related to
JobProcessor.Bean classes for reading raster-files from the filesystem.
Non-bean classes for reading a
Channel from the
filesystem.Non-bean classes for reading a
Stack from the
filesystem.Classes relating to creating inputs for an experiment / task.
Beans related to collecting inputs from the file-system for an experiment.
Methods to provide a collection of
Files.Beans to derive names (compact unique identifiers) from files.
Beans to find a subset of files that match a particular conditions on their paths.
Non-bean classes that relate to using files during inputting.
Loading and displaying pre-defined tasks.
Beans for reading data structures related to marked point processes from the file system.
Non-beans for reading data structures related to marked point processes from the file system.
Comparing the similarity of annotations from two images to each other.
Task to compare a set of annotations to a segmentation or another set of annotations.
Strategies for how to annotate an image, such label per image etc.
Non-bean classes for comparing two sets of annotations.
Tasks pertaining to
Features.Source of rows in feature-tables with
FeatureSource and derived classes.Non-bean classes pertaining to combining stacks into a single stack.
Grouping files together so that they collectively represent a single entity.
Beans to specify a file-path.
Implementations of
InputManager.InputManagers that accept a set of
named-channels.InputManagers that accept a set of named-files.Implementations of
InputManager that filter inputs.Implementations of
InputManager that process Stacks.Implementations of
Summarizer that summarize
generically InputFromManagers.Implementations of
Task related to file-system
I/O.Non-bean classes to help tasks in
org.anchoranalysis.plugin.io.bean.input.filter.Converting from
NamedChannelsInput to the
input-type expected by a Task.Shared-state use across tasks in this JAR.
Helper classes to execute
Tasks in tests.-
Classes in org.anchoranalysis.io.input used by org.anchoranalysis.annotation.ioClassDescriptionOne particular input for processing.A base class for
InputFromManager-implementing classes that delegate to another.When an error occurs reading an input. -
Classes in org.anchoranalysis.io.input used by org.anchoranalysis.annotation.io.beanClassDescriptionWhen an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.annotation.io.bean.comparer
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.annotation.io.image
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.experiment.argumentsClassDescriptionAdditional parameters that offer context for many beans that provide input-functions.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.experiment.bean.io
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.experiment.bean.processor
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.experiment.bean.task
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.experiment.io
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.experiment.task
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.experiment.task.processor
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.image.io.bean.stack.reader
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.image.io.channel.input
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.image.io.stack.input
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.io.inputClassDescriptionOne particular input for processing.When an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.io.input.beanClassDescriptionAdditional parameters that offer context for many beans that provide input-functions.One particular input for processing.When an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.io.input.bean.filesClassDescriptionAdditional parameters that offer context for many beans that provide input-functions.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.io.input.bean.namer
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.io.input.bean.path.matcherClassDescriptionAdditional parameters that offer context for many beans that provide input-functions.When an error occurs reading an input.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.io.input.file
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.launcher.run.tasks
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.mpp.io.bean.inputClassDescriptionWhen an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.mpp.io.input
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.annotation.bean.comparer
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.annotation.bean.comparisonClassDescriptionOne particular input for processing.When an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.annotation.bean.strategy
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.annotation.comparisonClassDescriptionOne particular input for processing.A base class for
InputFromManager-implementing classes that delegate to another. -
Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.image.task.bean.feature
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.image.task.slice
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.file.groupClassDescriptionWhen an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.file.path
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.inputClassDescriptionOne particular input for processing.When an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.input.channelClassDescriptionWhen an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.input.filesClassDescriptionOne particular input for processing.When an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.input.filterClassDescriptionOne particular input for processing.When an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs.
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.input.stackClassDescriptionOne particular input for processing.A base class for
InputFromManager-implementing classes that delegate to another.When an error occurs reading an input.All inputs for an experiment, together with any parent directory which is specified as a parent for these inputs. -
Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.summarizer.input
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.bean.task
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.io.input.filter
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.plugin.mpp.bean.convert
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Classes in org.anchoranalysis.io.input used by org.anchoranalysis.test.experiment.task