Package | Description |
---|---|
org.anchoranalysis.annotation.io |
Reading and writing annotations to the filesystem.
|
org.anchoranalysis.annotation.io.bean |
Beans related to reading / writing / specifying annotations.
|
org.anchoranalysis.annotation.io.bean.comparer |
What to compare an annotation (ground truth) against?
|
org.anchoranalysis.annotation.io.image |
Reading and writing whole-image label annotations.
|
org.anchoranalysis.annotation.io.mark |
Reading and writing
Mark -related annotations from/to the
file-system. |
org.anchoranalysis.experiment.arguments |
Arguments that can further specify an experiment in addition to its bean specification.
|
org.anchoranalysis.experiment.bean.io |
Generic experiments that handle input and output in structured ways.
|
org.anchoranalysis.experiment.bean.processor |
How a task is executed on multiple inputs.
|
org.anchoranalysis.experiment.bean.task |
Defines a task,
which is a set of operations run on an input, that may or may not generate an output.
|
org.anchoranalysis.experiment.io |
Interfaces for replacing attributes of an experiment: input, output, task etc.
|
org.anchoranalysis.experiment.task |
Non-bean classes related to a
Task . |
org.anchoranalysis.experiment.task.processor |
Non-bean classes related to
JobProcessor . |
org.anchoranalysis.image.io.bean.stack.reader |
Bean classes for reading raster-files from the filesystem.
|
org.anchoranalysis.image.io.channel.input |
Non-bean classes for reading a
Channel from the
filesystem. |
org.anchoranalysis.image.io.stack.input |
Non-bean classes for reading a
Stack from the
filesystem. |
org.anchoranalysis.io.input |
Classes relating to creating inputs for an experiment / task.
|
org.anchoranalysis.io.input.bean |
Beans related to collecting inputs from the file-system for an experiment.
|
org.anchoranalysis.io.input.bean.files |
Methods to provide a collection of
File s. |
org.anchoranalysis.io.input.bean.namer |
Beans to derive names (compact unique identifiers) from files.
|
org.anchoranalysis.io.input.bean.path.matcher |
Beans to find a subset of files that match a particular conditions on their paths.
|
org.anchoranalysis.io.input.file |
Non-bean classes that relate to using files during inputting.
|
org.anchoranalysis.launcher.run.tasks |
Loading and displaying pre-defined tasks.
|
org.anchoranalysis.mpp.io.bean.input |
Beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.io.input |
Non-beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.plugin.annotation.bean.comparer |
Comparing the similarity of annotations from two images to each other.
|
org.anchoranalysis.plugin.annotation.bean.comparison |
Task to compare a set of annotations to a segmentation or another set of annotations.
|
org.anchoranalysis.plugin.annotation.bean.strategy |
Strategies for how to annotate an image, such label per image etc.
|
org.anchoranalysis.plugin.annotation.comparison |
Non-bean classes for comparing two sets of annotations.
|
org.anchoranalysis.plugin.image.task.bean.feature |
Tasks pertaining to
Feature s. |
org.anchoranalysis.plugin.image.task.bean.feature.source |
Source of rows in feature-tables with
FeatureSource and derived classes. |
org.anchoranalysis.plugin.image.task.slice |
Non-bean classes pertaining to combining stacks into a single stack.
|
org.anchoranalysis.plugin.io.bean.file.group |
Grouping files together so that they collectively represent a single entity.
|
org.anchoranalysis.plugin.io.bean.file.path |
Beans to specify a file-path.
|
org.anchoranalysis.plugin.io.bean.input |
Implementations of
InputManager . |
org.anchoranalysis.plugin.io.bean.input.channel |
InputManager s that accept a set of
named-channels. |
org.anchoranalysis.plugin.io.bean.input.files |
InputManager s that accept a set of named-files. |
org.anchoranalysis.plugin.io.bean.input.filter |
Implementations of
InputManager that filter inputs. |
org.anchoranalysis.plugin.io.bean.input.stack |
Implementations of
InputManager that process Stack s. |
org.anchoranalysis.plugin.io.bean.summarizer.input |
Implementations of
Summarizer that summarize
generically InputFromManager s. |
org.anchoranalysis.plugin.io.bean.task |
Implementations of
Task related to file-system
I/O. |
org.anchoranalysis.plugin.io.input.filter |
Non-bean classes to help tasks in
org.anchoranalysis.plugin.io.bean.input.filter . |
org.anchoranalysis.plugin.mpp.experiment.bean.convert |
Converting from
NamedChannelsInput to the
input-type expected by a Task . |
org.anchoranalysis.plugin.mpp.experiment.bean.objects |
Tasks involving
ObjectMask s. |
org.anchoranalysis.plugin.mpp.experiment.objects |
Non-bean classes used in
org.anchoranalysis.plugin.mpp.experiment.bean.objects . |
org.anchoranalysis.plugin.mpp.experiment.shared |
Shared-state use across tasks in this JAR.
|
org.anchoranalysis.plugin.quick.bean.experiment |
Quickly defining experiments via several assumptions, including particular file-paths.
|
org.anchoranalysis.plugin.quick.bean.input |
Specifying inputs when quickly defining an experiment.
|
org.anchoranalysis.plugin.quick.bean.structure |
Specifying a structure of subdirectories and filenames when quickly defining an experiment.
|
org.anchoranalysis.test.experiment.task |
Helper classes to execute
Task s in tests. |
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputFromManagerDelegate
A base class for
InputFromManager -implementing classes that delegate to another. |
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputContextParameters
Additional parameters that offer context for many beans that provide input-functions.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputContextParameters
Additional parameters that offer context for many beans that provide input-functions.
|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputContextParameters
Additional parameters that offer context for many beans that provide input-functions.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputContextParameters
Additional parameters that offer context for many beans that provide input-functions.
|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputFromManagerDelegate
A base class for
InputFromManager -implementing classes that delegate to another. |
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputFromManagerDelegate
A base class for
InputFromManager -implementing classes that delegate to another. |
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputFromManagerDelegate
A base class for
InputFromManager -implementing classes that delegate to another. |
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
InputReadFailedException
When an error occurs reading an input.
|
InputsWithDirectory
All inputs for an experiment, together with any parent directory which is specified as a parent
for these inputs.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Class and Description |
---|
InputFromManager
One particular input for processing.
|
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.