Uses of Class
org.anchoranalysis.io.input.InputsWithDirectory

Packages that use InputsWithDirectory

Package	Description
org.anchoranalysis.annotation.io.bean	Beans related to reading / writing / specifying annotations.
org.anchoranalysis.io.input	Classes relating to creating inputs for an experiment / task.
org.anchoranalysis.io.input.bean	Beans related to collecting inputs from the file-system for an experiment.
org.anchoranalysis.mpp.io.bean.input	Beans for reading data structures related to marked point processes from the file system.
org.anchoranalysis.plugin.annotation.bean.comparison	Task to compare a set of annotations to a segmentation or another set of annotations.
org.anchoranalysis.plugin.io.bean.file.group	Grouping files together so that they collectively represent a single entity.
org.anchoranalysis.plugin.io.bean.input	Implementations of InputManager.
org.anchoranalysis.plugin.io.bean.input.channel	InputManagers that accept a set of named-channels.
org.anchoranalysis.plugin.io.bean.input.files	InputManagers that accept a set of named-files.
org.anchoranalysis.plugin.io.bean.input.filter	Implementations of InputManager that filter inputs.
org.anchoranalysis.plugin.io.bean.input.stack	Implementations of InputManager that process Stacks.

Uses of InputsWithDirectory in org.anchoranalysis.annotation.io.bean

Methods in org.anchoranalysis.annotation.io.bean that return InputsWithDirectory

Modifier and Type	Method	Description
InputsWithDirectory<AnnotationWithStrategy<S>>	AnnotationInputManager.inputs(InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.io.input

Methods in org.anchoranalysis.io.input that return InputsWithDirectory

Modifier and Type	Method	Description
<S extends InputFromManager> InputsWithDirectory<S>	InputsWithDirectory.map(Function<T,S> mapFunction)	Creates a new InputsWithDirectory which is the result of mapping the existing inputs.
<S extends InputFromManager, E extends Exception> InputsWithDirectory<S>	InputsWithDirectory.map(CheckedFunction<T,S,E> mapFunction, Class<? extends E> throwableClass)	Creates a new InputsWithDirectory which is the result of mapping the existing inputs.
<S extends InputFromManager> InputsWithDirectory<S>	InputsWithDirectory.withInputs(List<S> inputsToAssign)	Changes the inputs, but preserves the directory.

Uses of InputsWithDirectory in org.anchoranalysis.io.input.bean

Methods in org.anchoranalysis.io.input.bean that return InputsWithDirectory

Modifier and Type	Method	Description
abstract InputsWithDirectory<T>	InputManager.inputs(InputManagerParameters parameters)	Creates a list of inputs given particular parameters.
InputsWithDirectory<T>	InputManagerUnary.inputs(InputManagerParameters parameters)
protected abstract InputsWithDirectory<T>	InputManagerUnary.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)	Calculates the inputs to return given the inputs from the delegate.

Methods in org.anchoranalysis.io.input.bean with parameters of type InputsWithDirectory

Modifier and Type	Method	Description
protected abstract InputsWithDirectory<T>	InputManagerUnary.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)	Calculates the inputs to return given the inputs from the delegate.

Uses of InputsWithDirectory in org.anchoranalysis.mpp.io.bean.input

Methods in org.anchoranalysis.mpp.io.bean.input that return InputsWithDirectory

Modifier and Type	Method	Description
InputsWithDirectory<MultiInput>	MultiInputManager.inputs(InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.plugin.annotation.bean.comparison

Methods in org.anchoranalysis.plugin.annotation.bean.comparison that return InputsWithDirectory

Modifier and Type	Method	Description
InputsWithDirectory<AnnotationComparisonInput<T>>	AnnotationComparisonInputManager.inputs(InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.plugin.io.bean.file.group

Methods in org.anchoranalysis.plugin.io.bean.file.group that return InputsWithDirectory

Modifier and Type	Method	Description
InputsWithDirectory<NamedChannelsInput>	GroupFiles.inputs(InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.plugin.io.bean.input

Methods in org.anchoranalysis.plugin.io.bean.input that return InputsWithDirectory

Modifier and Type	Method	Description
InputsWithDirectory<T>	Concatenate.inputs(InputManagerParameters parameters)
protected InputsWithDirectory<T>	BranchIfDebug.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Exclude.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Limit.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	LimitIfRequested.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Shuffle.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	ShuffleIfRequested.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	SortAlphabetically.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)

Methods in org.anchoranalysis.plugin.io.bean.input with parameters of type InputsWithDirectory

Modifier and Type	Method	Description
protected InputsWithDirectory<T>	BranchIfDebug.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Exclude.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Limit.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	LimitIfRequested.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Shuffle.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	ShuffleIfRequested.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	SortAlphabetically.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.plugin.io.bean.input.channel

Methods in org.anchoranalysis.plugin.io.bean.input.channel that return InputsWithDirectory

Modifier and Type	Method	Description
InputsWithDirectory<NamedChannelsInputPart>	NamedChannels.inputs(InputManagerParameters parameters)
InputsWithDirectory<NamedChannelsInputPart>	NamedChannelsAppend.inputs(InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.plugin.io.bean.input.files

Methods in org.anchoranalysis.plugin.io.bean.input.files that return InputsWithDirectory

Modifier and Type	Method	Description
protected InputsWithDirectory<T>	NamedFilesBase.createInputsFromFiles(FilesProvider files, InputManagerParameters parameters, Function<NamedFile,T> mapToInput)	Creates a list of inputs from a FilesProvider which together with the namer can create the inputs.
InputsWithDirectory<FileInput>	NamedFiles.inputs(InputManagerParameters parameters)
InputsWithDirectory<FileWithDirectoryInput>	NamedFilesWithDirectory.inputs(InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.plugin.io.bean.input.filter

Methods in org.anchoranalysis.plugin.io.bean.input.filter that return InputsWithDirectory

Modifier and Type	Method	Description
protected InputsWithDirectory<T>	FilterCSVColumn.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	FilterDescriptiveName.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	FilterIfDebug.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)

Methods in org.anchoranalysis.plugin.io.bean.input.filter with parameters of type InputsWithDirectory

Modifier and Type	Method	Description
protected InputsWithDirectory<T>	FilterCSVColumn.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	FilterDescriptiveName.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	FilterIfDebug.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)

Uses of InputsWithDirectory in org.anchoranalysis.plugin.io.bean.input.stack

Methods in org.anchoranalysis.plugin.io.bean.input.stack that return InputsWithDirectory

Modifier and Type	Method	Description
InputsWithDirectory<StackSequenceInput>	ConvertNamedChannelsToStack.inputs(InputManagerParameters parameters)
InputsWithDirectory<StackSequenceInput>	Stacks.inputs(InputManagerParameters parameters)