Uses of Class
org.anchoranalysis.mpp.feature.energy.saved.EnergySavedIndividual

Packages that use EnergySavedIndividual

Package	Description
org.anchoranalysis.mpp.feature.energy.marks	Non-bean classes pertaining to calculating energy of {org.anchoranalysis.mpp.mark.Mark}s.
org.anchoranalysis.mpp.feature.energy.saved	Saved snapshots of energy-calculations.
org.anchoranalysis.mpp.feature.mark	Non-bean classes for calculating feature-values related to Marks.

Uses of EnergySavedIndividual in org.anchoranalysis.mpp.feature.energy.marks

Methods in org.anchoranalysis.mpp.feature.energy.marks that return EnergySavedIndividual

Modifier and Type	Method	Description
EnergySavedIndividual	MarksWithEnergyBreakdown.getIndividual()	Energy saved for individual marks.

Constructors in org.anchoranalysis.mpp.feature.energy.marks with parameters of type EnergySavedIndividual

Modifier	Constructor	Description
	MarksWithEnergyBreakdown(MarksWithTotalEnergy marks, EnergySavedIndividual individual, EnergySavedPairs pair, EnergySavedAll all)	Creates a new MarksWithEnergyBreakdown instance.

Uses of EnergySavedIndividual in org.anchoranalysis.mpp.feature.energy.saved

Methods in org.anchoranalysis.mpp.feature.energy.saved that return EnergySavedIndividual

Modifier and Type	Method	Description
EnergySavedIndividual	EnergySavedIndividual.deepCopy()	Creates a deep copy of this instance.
EnergySavedIndividual	EnergySavedIndividual.shallowCopy()	Creates a shallow copy of this instance.

Uses of EnergySavedIndividual in org.anchoranalysis.mpp.feature.mark

Methods in org.anchoranalysis.mpp.feature.mark with parameters of type EnergySavedIndividual

Modifier and Type	Method	Description
VoxelizedMarkMemo	EnergyMemoList.add(EnergySavedIndividual energySavedInd, VoxelizedMarkMemo memo, EnergyStackWithoutParameters stack, EnergySchemeWithSharedFeatures energyScheme)	Adds a new mark to the list and calculates its energy.
VoxelizedMarkMemo	EnergyMemoList.exchange(EnergySavedIndividual energySavedInd, int index, VoxelizedMarkMemo newMark, EnergyStackWithoutParameters stack, EnergySchemeWithSharedFeatures energySchemeTotal)	Exchanges a mark at a specific index with a new mark and recalculates energies.
void	EnergyMemoList.remove(EnergySavedIndividual energySavedInd, int index)	Removes a mark at a specific index and updates energies.
void	EnergyMemoList.removeTwo(EnergySavedIndividual energySavedInd, int index1, int index2)	Removes two marks at specific indices and updates energies.

Constructors in org.anchoranalysis.mpp.feature.mark with parameters of type EnergySavedIndividual

Modifier	Constructor	Description
	EnergyMemoList(EnergySavedIndividual savedInd, EnergyStackWithoutParameters energyStack, MarkCollection marks, EnergySchemeWithSharedFeatures energySchemeTotal)	Creates an energy memo list with the given parameters.