Uses of Class
org.anchoranalysis.mpp.feature.energy.scheme.EnergySchemeWithSharedFeatures

Packages that use EnergySchemeWithSharedFeatures

Package	Description
org.anchoranalysis.mpp.feature.energy.marks	Non-bean classes pertaining to calculating energy of {org.anchoranalysis.mpp.mark.Mark}s.
org.anchoranalysis.mpp.feature.energy.saved	Saved snapshots of energy-calculations.
org.anchoranalysis.mpp.feature.mark	Non-bean classes for calculating feature-values related to Marks.

Uses of EnergySchemeWithSharedFeatures in org.anchoranalysis.mpp.feature.energy.marks

Methods in org.anchoranalysis.mpp.feature.energy.marks that return EnergySchemeWithSharedFeatures

Modifier and Type	Method	Description
EnergySchemeWithSharedFeatures	MarksWithEnergyBreakdown.getEnergyScheme()	Gets the energy scheme with shared features.
EnergySchemeWithSharedFeatures	MarksWithTotalEnergy.getEnergyScheme()	Associated Energy Scheme, which should include the EnergySavedPairs.

Constructors in org.anchoranalysis.mpp.feature.energy.marks with parameters of type EnergySchemeWithSharedFeatures

Modifier	Constructor	Description
	MarksWithTotalEnergy(MarkCollection marks, EnergySchemeWithSharedFeatures energyScheme)	Creates a new instance with the given marks and energy scheme.

Uses of EnergySchemeWithSharedFeatures in org.anchoranalysis.mpp.feature.energy.saved

Methods in org.anchoranalysis.mpp.feature.energy.saved with parameters of type EnergySchemeWithSharedFeatures

Modifier and Type	Method	Description
void	EnergySavedAll.calc(EnergyMemoList memoList, EnergySchemeWithSharedFeatures energyScheme, EnergyStackWithoutParameters energyStack)	Calculates the total energy for all items using the provided energy scheme and stack.

Uses of EnergySchemeWithSharedFeatures in org.anchoranalysis.mpp.feature.mark

Methods in org.anchoranalysis.mpp.feature.mark with parameters of type EnergySchemeWithSharedFeatures

Modifier and Type	Method	Description
VoxelizedMarkMemo	EnergyMemoList.add(EnergySavedIndividual energySavedInd, VoxelizedMarkMemo memo, EnergyStackWithoutParameters stack, EnergySchemeWithSharedFeatures energyScheme)	Adds a new mark to the list and calculates its energy.
VoxelizedMarkMemo	EnergyMemoList.exchange(EnergySavedIndividual energySavedInd, int index, VoxelizedMarkMemo newMark, EnergyStackWithoutParameters stack, EnergySchemeWithSharedFeatures energySchemeTotal)	Exchanges a mark at a specific index with a new mark and recalculates energies.

Constructors in org.anchoranalysis.mpp.feature.mark with parameters of type EnergySchemeWithSharedFeatures

Modifier	Constructor	Description
	EnergyMemoList(EnergySavedIndividual savedInd, EnergyStackWithoutParameters energyStack, MarkCollection marks, EnergySchemeWithSharedFeatures energySchemeTotal)	Creates an energy memo list with the given parameters.