Modifier and Type | Method and Description |
---|---|
MarkCollection |
DualMarksAnnotationReader.readDefaultMarks(Path path,
OperationContext context)
Reads the annotations as a
MarkCollection from the file-system. |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
DualMarks.accepted()
The accepted marks.
|
MarkCollection |
DualMarksAnnotation.getMarksReject()
Marks covering area that should be rejected, can be null
|
MarkCollection |
AnnotationWithMarks.marks()
The marks associated with the annotation
|
MarkCollection |
DualMarksAnnotation.marks() |
MarkCollection |
DualMarks.rejected()
The rejected marks.
|
Modifier and Type | Method and Description |
---|---|
Optional<Mark> |
CreateMarkFromPoints.fitMarkToPointsFromMarks(MarkCollection marks,
Dimensions dimensions)
Extract points from a marks, creates a new mark from markProvider and then fits this mark the
extracted points
|
Modifier and Type | Method and Description |
---|---|
abstract Optional<MarkCollection> |
MarkCollectionProposer.propose(MarkWithIdentifierFactory markFactory,
ProposerContext context) |
Modifier and Type | Method and Description |
---|---|
abstract Optional<Mark> |
MarkFromCollectionProposer.selectMarkFrom(MarkCollection marks,
ProposerContext context) |
Modifier and Type | Method and Description |
---|---|
boolean |
RandomCollectionWithAddCriteria.isMarksSpan(MarkCollection marks) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
FeatureInputMarkCollection.getMarks() |
Constructor and Description |
---|
FeatureInputMarkCollection(MarkCollection marks,
Optional<Dimensions> dimensions) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
MarksWithEnergyBreakdown.getMarks() |
MarkCollection |
MarksWithTotalEnergy.getMarks()
The marks
|
Modifier and Type | Method and Description |
---|---|
void |
MarksWithTotalEnergy.setMarks(MarkCollection marks)
The marks
|
Constructor and Description |
---|
MarksWithTotalEnergy(MarkCollection marks,
EnergySchemeWithSharedFeatures energyScheme) |
Modifier and Type | Method and Description |
---|---|
String |
EnergySavedInd.describeMarks(MarkCollection marks) |
boolean |
EnergySavedPairs.isMarksSpan(MarkCollection marks) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
EnergyMemoList.asMarks() |
Modifier and Type | Method and Description |
---|---|
VoxelizedMarkMemo |
EnergyMemoList.getMemoForMark(MarkCollection marks,
Mark mark) |
Constructor and Description |
---|
EnergyMemoList(EnergySavedInd savedInd,
EnergyStackWithoutParameters energyStack,
MarkCollection marks,
EnergySchemeWithSharedFeatures energySchemeTotal) |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<MarkCollection> |
MarksInitialization.marks() |
Modifier and Type | Method and Description |
---|---|
MultiInputSubMap<MarkCollection> |
MultiInput.marks() |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
MarkCollectionDeserializer.deserialize(Path filePath,
OperationContext context) |
MarkCollection |
MarksWithDisplayStack.getMarks() |
Modifier and Type | Method and Description |
---|---|
void |
MarksWithDisplayStack.setMarks(MarkCollection marks) |
Constructor and Description |
---|
MarksWithDisplayStack(MarkCollection marks,
DisplayStack stack) |
Modifier and Type | Method and Description |
---|---|
Stack |
MarksAsUniqueValueGenerator.transform(MarkCollection element) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
MarkCollection.createMerged(MarkCollection toMerge) |
MarkCollection |
MarkCollection.deepCopy() |
MarkCollection |
ColoredMarks.getMarks() |
MarkCollection |
MarkCollection.marksAt(Point3i point,
RegionMap regionMap,
int regionID) |
MarkCollection |
MarkCollection.shallowCopy() |
Modifier and Type | Method and Description |
---|---|
void |
MarkCollection.addAll(MarkCollection marks) |
void |
ColoredMarks.addAll(MarkCollection marks,
RGBColor color) |
MarkCollection |
MarkCollection.createMerged(MarkCollection toMerge) |
boolean |
MarkCollection.equalsDeep(MarkCollection other) |
Constructor and Description |
---|
ColoredMarks(MarkCollection marks,
ColorIndex colorIndex,
IdentifierGetter<Mark> colorIDGetter) |
ColoredMarks(MarkCollection marks,
ColorList colorList) |
Modifier and Type | Method and Description |
---|---|
static MarkCollection |
OverlayCollectionMarkFactory.marksFromOverlays(OverlayCollection overlays) |
Modifier and Type | Method and Description |
---|---|
static OverlayCollection |
OverlayCollectionMarkFactory.createWithoutColor(MarkCollection marks,
RegionMembershipWithFlags regionMembership) |
Modifier and Type | Method and Description |
---|---|
abstract MarkCollection |
SegmentIntoMarks.segment(SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
InputOutputContext context) |
Modifier and Type | Method and Description |
---|---|
Optional<MarkCollection> |
FromProvider.propose(MarkWithIdentifierFactory markFactory,
ProposerContext context) |
Optional<MarkCollection> |
FromMarkProposer.propose(MarkWithIdentifierFactory markFactory,
ProposerContext context) |
Optional<MarkCollection> |
FromObjects.propose(MarkWithIdentifierFactory markFactory,
ProposerContext context) |
Optional<MarkCollection> |
FromSerializedMarks.propose(MarkWithIdentifierFactory markFactory,
ProposerContext context) |
Optional<MarkCollection> |
CreateNew.propose(MarkWithIdentifierFactory markFactory,
ProposerContext context) |
Modifier and Type | Method and Description |
---|---|
Optional<Mark> |
Check.selectMarkFrom(MarkCollection marks,
MarkFromCollectionProposer proposer,
ProposerContext context) |
Optional<Mark> |
UniformRandom.selectMarkFrom(MarkCollection marks,
MarkFromCollectionProposer proposer,
ProposerContext context) |
protected abstract Optional<Mark> |
MarkFromCollectionProposerUnary.selectMarkFrom(MarkCollection marks,
MarkFromCollectionProposer proposer,
ProposerContext context) |
protected Optional<Mark> |
Repeat.selectMarkFrom(MarkCollection marks,
MarkFromCollectionProposer proposer,
ProposerContext context) |
Optional<Mark> |
MarkFromCollectionProposerUnary.selectMarkFrom(MarkCollection marks,
ProposerContext context) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
Reference.get() |
MarkCollection |
PointsFromObjects.get() |
MarkCollection |
ScaleXY.get() |
MarkCollection |
CreateNew.get() |
MarkCollection |
ReferenceOrEmpty.get() |
MarkCollection |
FromSingleMark.get() |
Modifier and Type | Method and Description |
---|---|
static MarkCollection |
MarksFromEnergyHelper.marksFromMemo(EnergyMemoList list) |
Modifier and Type | Method and Description |
---|---|
Optional<MarkCollection> |
KernelInitialMarksProposed.makeProposal(Optional<MarkCollection> existing,
KernelCalculationContext context) |
Modifier and Type | Method and Description |
---|---|
protected static int |
KernelDeath.selectIndexToRmv(MarkCollection exst,
ProposerContext propContext) |
void |
KernelInitialMarksProposed.updateAfterAcceptance(UpdatableMarksList updatableState,
MarkCollection exst,
MarkCollection accptd) |
Modifier and Type | Method and Description |
---|---|
Optional<MarkCollection> |
KernelInitialMarksProposed.makeProposal(Optional<MarkCollection> existing,
KernelCalculationContext context) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
SegmentWithMarkedPointProcess.segment(SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
InputOutputContext context) |
Modifier and Type | Method and Description |
---|---|
VoxelizedMarksWithEnergy |
PointsFitter.transform(MarkCollection in,
TransformationContext context) |
Modifier and Type | Method and Description |
---|---|
StateTransformerBean<MarkCollection,VoxelizedMarksWithEnergy> |
AddDualTransformer.getTransformerMarks() |
Modifier and Type | Method and Description |
---|---|
void |
AddDualTransformer.setTransformerMarks(StateTransformerBean<MarkCollection,VoxelizedMarksWithEnergy> transformerMarks) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
RemovePartition.transform(MarksFromPartition marks,
TransformationContext context) |
Modifier and Type | Method and Description |
---|---|
StateTransformerBean<MarkCollection,T> |
RemovePartitionAndThen.getTransformer() |
Modifier and Type | Method and Description |
---|---|
void |
RemovePartitionAndThen.setTransformer(StateTransformerBean<MarkCollection,T> transformer) |
Modifier and Type | Method and Description |
---|---|
VoxelizedMarksWithEnergy |
AddEnergy.transform(MarkCollection in,
TransformationContext context) |
Modifier and Type | Method and Description |
---|---|
protected Optional<MarkCollection> |
TextFileMarksReporter.generateIterableElement(Reporting<VoxelizedMarksWithEnergy> reporting) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
MarksFromPartition.getMarks() |
Modifier and Type | Method and Description |
---|---|
MarksFromPartition |
MarksFromPartition.copyChange(MarkCollection marksToAssign)
Makes a copy, with different marks
|
static VoxelizedMarksWithEnergy |
VoxelizedMarksWithEnergyFactory.createFromMarks(MarkCollection marks,
KernelCalculationContext context,
Logger logger) |
Constructor and Description |
---|
MarksFromPartition(MarkCollection marks,
PartitionedMarks partition) |
PartitionedMarks(MarkCollection marks,
java.util.function.ToDoubleFunction<Mark> funcExtractWeight)
Constructor
|
Modifier and Type | Method and Description |
---|---|
MarkCollection |
FitPointsFromObjects.get() |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.