Package | Description |
---|---|
org.anchoranalysis.mpp.feature.addcriteria |
Criteria for adding edges during optimization of marked-point-processes.
|
org.anchoranalysis.mpp.feature.energy.marks |
Non-bean classes pertaining to calculating energy of {org.anchoranalysis.mpp.mark.Mark}s.
|
org.anchoranalysis.mpp.feature.energy.saved |
Saved snapshots of energy-calculations.
|
org.anchoranalysis.mpp.feature.mark |
Non-bean classes for calculating feature-values related to
Mark s. |
org.anchoranalysis.mpp.mark |
Non-bean classes related to
Mark s. |
org.anchoranalysis.mpp.segment.bean.optimization.kernel |
Base classes for kernels that transition a configuration of marks (a
MarkCollection ) into an altered version. |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.dependent.mark |
Implementations of
KernelBirth that are
dependent. |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent |
Implementations of
KernelBirth that are
independent. |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent.voxelized |
Implementations of
KernelBirth that are
independent but use the voxelized state of a Mark . |
org.anchoranalysis.plugin.mpp.segment.kernel.updater |
KernelUpdater and implementations. |
Modifier and Type | Method and Description |
---|---|
void |
RandomCollectionWithAddCriteria.add(MemoForIndex marksExisting,
VoxelizedMarkMemo newMark) |
void |
RandomCollectionWithAddCriteria.exchange(MemoForIndex memo,
VoxelizedMarkMemo oldMark,
int indexOldMark,
VoxelizedMarkMemo newMark) |
void |
RandomCollectionWithAddCriteria.remove(MemoForIndex marksExisting,
VoxelizedMarkMemo mark) |
Modifier and Type | Method and Description |
---|---|
void |
VoxelizedMarksWithEnergy.addAllToUpdatablePairList(UpdatableMarksList updatablePairList) |
void |
VoxelizedMarksWithEnergy.addToUpdatablePairList(UpdatableMarksList updatablePairList,
VoxelizedMarkMemo memo) |
void |
VoxelizedMarksWithEnergy.exchangeOnUpdatablePairList(UpdatableMarksList updatablePairList,
Mark markExst,
VoxelizedMarkMemo memoNew) |
void |
VoxelizedMarksWithEnergy.rmvFromUpdatablePairList(UpdatableMarksList updatablePairList,
Mark mark) |
Modifier and Type | Method and Description |
---|---|
void |
EnergySavedPairs.add(MemoForIndex pxlMarkMemoList,
VoxelizedMarkMemo newMark) |
void |
EnergySavedPairs.exchange(MemoForIndex memo,
VoxelizedMarkMemo oldMark,
int indexOldMark,
VoxelizedMarkMemo newMark) |
void |
EnergySavedPairs.remove(MemoForIndex marksExisting,
VoxelizedMarkMemo mark) |
Modifier and Type | Method and Description |
---|---|
void |
UpdatableMarksList.add(MemoForIndex listToAdd) |
void |
UpdatableMarksList.add(MemoForIndex marksExisting,
VoxelizedMarkMemo newMark) |
void |
UpdatableMarksList.exchange(MemoForIndex memo,
VoxelizedMarkMemo oldMark,
int indexOldMark,
VoxelizedMarkMemo newMark) |
void |
UpdatableMarksList.remove(MemoForIndex marksExisting,
VoxelizedMarkMemo mark) |
Modifier and Type | Method and Description |
---|---|
void |
UpdatableMarks.add(MemoForIndex marksExisting,
VoxelizedMarkMemo newMark) |
void |
UpdatableMarks.exchange(MemoForIndex memo,
VoxelizedMarkMemo oldMark,
int indexOldMark,
VoxelizedMarkMemo newMark) |
void |
UpdatableMarks.remove(MemoForIndex marksExisting,
VoxelizedMarkMemo mark) |
Modifier and Type | Method and Description |
---|---|
abstract void |
Kernel.updateAfterAcceptance(S updatableState,
T energyExisting,
T energyNew)
If the kernel is accepted, makes the necessary changes to a ListUpdatableMarkSetCollection
|
Modifier and Type | Method and Description |
---|---|
void |
KernelDeathPartition.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
MarksFromPartition energyExisting,
MarksFromPartition energyNew) |
void |
KernelBirthPartition.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
MarksFromPartition energyExisting,
MarksFromPartition energyNew) |
Modifier and Type | Method and Description |
---|---|
void |
KernelDeathVoxelized.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
VoxelizedMarksWithEnergy energyExisting,
VoxelizedMarksWithEnergy energyNew) |
void |
KernelBirthVoxelized.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
VoxelizedMarksWithEnergy exst,
VoxelizedMarksWithEnergy accepted) |
Modifier and Type | Method and Description |
---|---|
void |
KernelUpdaterSimple.kernelAccepted(Kernel<S,U> kernel,
Optional<T> current,
T proposed,
TransformationContext context) |
void |
KernelUpdater.kernelAccepted(Kernel<S,U> kernel,
Optional<T> current,
T proposed,
TransformationContext context)
Informs that a proposal from a particular kernel has been accepted
|
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.