Package org.anchoranalysis.plugin.annotation.bean.aggregate

Class AnnotationAggregateCSVGenerator

Object

SingleFileTypeGenerator<List<ImageAnnotation>,List<ImageAnnotation>>

OneStageGenerator<List<ImageAnnotation>>

CSVGenerator<List<ImageAnnotation>>

FeatureTableCSVGenerator<List<ImageAnnotation>>

AnnotationAggregateCSVGenerator

All Implemented Interfaces:

Generator<List<ImageAnnotation>>, TransformingGenerator<List<ImageAnnotation>,List<ImageAnnotation>>, ElementWriter<List<ImageAnnotation>>

public class AnnotationAggregateCSVGenerator
extends FeatureTableCSVGenerator<List<ImageAnnotation>>

Generates a CSV file containing aggregated annotation data.

This class extends FeatureTableCSVGenerator to create a CSV file with columns for image ID and label.

Constructor Summary

Constructors

Constructor	Description
AnnotationAggregateCSVGenerator()	Constructs an AnnotationAggregateCSVGenerator with predefined column headers.

Method Summary

Modifier and Type	Method	Description
protected void	writeFeaturesToCSV(CSVWriter writer, List<ImageAnnotation> allFeatureResults, List<String> headerNames)	Writes the features to the CSV-file.

Methods inherited from class org.anchoranalysis.feature.io.csv.table.FeatureTableCSVGenerator

writeToFile

Methods inherited from class org.anchoranalysis.io.generator.tabular.CSVGenerator

selectFileExtension

Methods inherited from class org.anchoranalysis.io.generator.OneStageGenerator

transform

Methods inherited from class org.anchoranalysis.io.generator.SingleFileTypeGenerator

write, writeWithIndex

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AnnotationAggregateCSVGenerator

public AnnotationAggregateCSVGenerator()

Constructs an AnnotationAggregateCSVGenerator with predefined column headers.

Method Details

writeFeaturesToCSV

protected void writeFeaturesToCSV(CSVWriter writer,
 List<ImageAnnotation> allFeatureResults,
 List<String> headerNames)
                           throws OutputWriteFailedException

Description copied from class: FeatureTableCSVGenerator

Writes the features to the CSV-file.

Specified by:

writeFeaturesToCSV in class FeatureTableCSVGenerator<List<ImageAnnotation>>

Parameters:

writer - the write to use

allFeatureResults - all rows to write

headerNames - header-names for columns, corresponding to the data in rows.

Throws:

OutputWriteFailedException - if the output cannot be written.