Package org.anchoranalysis.plugin.image.bean.channel.provider.convert

Class ConvertWithHistogram<T>

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

ConvertBase

ConvertWithHistogram<T>

Type Parameters:

T - the buffer-type to convert the channel to

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

public class ConvertWithHistogram<T>
extends ConvertBase

Converts a channel to a different voxel data-type by applying a converter with an associated histogram.

The histogram can be either provided, or it will be derived from the image anew.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ConvertWithHistogram()

Method Summary

Modifier and Type	Method	Description
Channel	createFromChannel(Channel channel)	Creates a Channel given the entity provided by the delegate.
ConvertChannelToWithHistogram<T>	getConvert()
HistogramProvider	getHistogram()	If set, a histogram used in conversion to describe input intensities (across perhaps multiple images).
void	setConvert(ConvertChannelToWithHistogram<T> convert)
void	setHistogram(HistogramProvider histogram)	If set, a histogram used in conversion to describe input intensities (across perhaps multiple images).

Methods inherited from class org.anchoranalysis.plugin.image.bean.channel.provider.convert.ConvertBase

createPolicy, isChangeExisting, setChangeExisting

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ConvertWithHistogram

public ConvertWithHistogram()

Method Details

createFromChannel

public Channel createFromChannel(Channel channel)
                          throws ProvisionFailedException

Description copied from class: ChannelProviderUnary

Creates a Channel given the entity provided by the delegate.

Specified by:

createFromChannel in class ChannelProviderUnary

Parameters:

channel - the entity provided by the delegate.

Returns:

the created Channel that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

getConvert

public ConvertChannelToWithHistogram<T> getConvert()

setConvert

public void setConvert(ConvertChannelToWithHistogram<T> convert)

getHistogram

public HistogramProvider getHistogram()

If set, a histogram used in conversion to describe input intensities (across perhaps multiple images). If unset, such a histogram is calculated from the current image.

setHistogram

public void setHistogram(HistogramProvider histogram)

If set, a histogram used in conversion to describe input intensities (across perhaps multiple images). If unset, such a histogram is calculated from the current image.