Package org.anchoranalysis.plugin.image.bean.channel.provider.object

Class LevelPerObjectIndependently

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

LevelPerObjectBase

LevelPerObjectIndependently

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

public class LevelPerObjectIndependently
extends LevelPerObjectBase

Creates a channel with different threshold-levels for each object, calculating the level only from the histogram of the particular object.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
LevelPerObjectIndependently()

Method Summary

Modifier and Type	Method	Description
int	getNumberDilations()
void	setNumberDilations(int numberDilations)
protected void	writeLevelsForObjects(Channel channelIntensity, ObjectCollection objects, Channel output)	Creates a channel with the levels for a set of objects.

Methods inherited from class org.anchoranalysis.plugin.image.bean.channel.provider.object.LevelPerObjectBase

createFromChannel, getCalculateLevel, getObjects, setCalculateLevel, setObjects

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

LevelPerObjectIndependently

public LevelPerObjectIndependently()

Method Details

writeLevelsForObjects

protected void writeLevelsForObjects(Channel channelIntensity,
 ObjectCollection objects,
 Channel output)
                              throws ProvisionFailedException

Description copied from class: LevelPerObjectBase

Creates a channel with the levels for a set of objects.

Specified by:

writeLevelsForObjects in class LevelPerObjectBase

Parameters:

channelIntensity - the channel whose intensity is passed to calculateLevel as a histogram variously for particular objects

objects - the ObjectCollection for which levels are calculated

output - the channel where the calculated-levels are written (for each object)

Throws:

ProvisionFailedException - if there's an error during the level calculation or writing process

getNumberDilations

public int getNumberDilations()

setNumberDilations

public void setNumberDilations(int numberDilations)