Package org.anchoranalysis.plugin.image.segment.thresholder.slice

Class SliceThresholder

Object

SliceThresholder

Direct Known Subclasses:

SliceThresholderMask, SliceThresholderWithoutMask

public abstract class SliceThresholder
extends Object

Segmenting a z-Stack slice-by-slice.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
SliceThresholder(BinaryValuesByte binaryValuesByte)	Creates a new SliceThresholder instance.

Method Summary

Modifier and Type	Method	Description
abstract void	segmentAll(Voxels<?> voxelsIn, Voxels<?> voxelsThreshold, Voxels<UnsignedByteBuffer> voxelsOut)	Segments all slices in the input voxels.
protected final void	writeOffByte(int offset, UnsignedByteBuffer bufferOut)	Writes the 'off' binary value to the output buffer at the specified offset.
protected final void	writeThresholdedByte(int offset, UnsignedByteBuffer bufferOut, VoxelBuffer<?> bufferIn, VoxelBuffer<?> bufferThreshold)	Writes a thresholded value to the output buffer based on the input and threshold buffers.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SliceThresholder

public SliceThresholder(BinaryValuesByte binaryValuesByte)

Creates a new SliceThresholder instance.

Parameters:

binaryValuesByte - The binary values to use for the output.

Method Details

segmentAll

public abstract void segmentAll(Voxels<?> voxelsIn,
 Voxels<?> voxelsThreshold,
 Voxels<UnsignedByteBuffer> voxelsOut)

Segments all slices in the input voxels.

Parameters:

voxelsIn - the input Voxels

voxelsThreshold - the threshold Voxels

voxelsOut - the output Voxels

writeOffByte

protected final void writeOffByte(int offset,
 UnsignedByteBuffer bufferOut)

Writes the 'off' binary value to the output buffer at the specified offset.

Parameters:

offset - the offset in the buffer

bufferOut - the output UnsignedByteBuffer

writeThresholdedByte

protected final void writeThresholdedByte(int offset,
 UnsignedByteBuffer bufferOut,
 VoxelBuffer<?> bufferIn,
 VoxelBuffer<?> bufferThreshold)

Writes a thresholded value to the output buffer based on the input and threshold buffers.

Parameters:

offset - the offset in the buffers

bufferOut - the output UnsignedByteBuffer

bufferIn - the input VoxelBuffer

bufferThreshold - the threshold VoxelBuffer