Package org.anchoranalysis.plugin.image.segment.thresholder.slice

Class SliceThresholderMask

Object

SliceThresholder

SliceThresholderMask

public class SliceThresholderMask
extends SliceThresholder

A slice thresholder that applies thresholding within a mask region.

Constructor Summary

Constructors

Constructor	Description
SliceThresholderMask(boolean clearOutsideMask, ObjectMask object, BinaryValuesByte binaryValues)	Creates a new SliceThresholderMask.

Method Summary

Modifier and Type	Method	Description
void	segmentAll(Voxels<?> voxelsIn, Voxels<?> voxelsThreshold, Voxels<UnsignedByteBuffer> voxelsOut)	Segments all slices in the input voxels.

Methods inherited from class org.anchoranalysis.plugin.image.segment.thresholder.slice.SliceThresholder

writeOffByte, writeThresholdedByte

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SliceThresholderMask

public SliceThresholderMask(boolean clearOutsideMask,
 ObjectMask object,
 BinaryValuesByte binaryValues)

Creates a new SliceThresholderMask.

Parameters:

clearOutsideMask - whether to clear voxels outside the mask

object - the ObjectMask defining the region for thresholding

binaryValues - the BinaryValuesByte to use for output

Method Details

segmentAll

public void segmentAll(Voxels<?> voxelsIn,
 Voxels<?> voxelsThreshold,
 Voxels<UnsignedByteBuffer> voxelsOut)

Description copied from class: SliceThresholder

Segments all slices in the input voxels.

Specified by:

segmentAll in class SliceThresholder

Parameters:

voxelsIn - the input Voxels

voxelsThreshold - the threshold Voxels

voxelsOut - the output Voxels