Package org.anchoranalysis.plugin.image.task.bean.format.convertstyle

Class ExtractToRGB

Object

AnchorBean<ChannelConvertStyle>

ChannelConvertStyle

ExtractToRGB

public class ExtractToRGB
extends ChannelConvertStyle

Extracts three channels to make an RGB image.

If the expected red/blue/green names in RGBChannelNames exist, these channels are used. Any other channels are ignored.

Otherwise, if exactly three channels exist, without the expected-names then the underlying order is used from the set.

If more than three channel exist, the first three are arbitrarily according by the underlying set ordering (usually alphabetical).

If a single-channel exists only, it is triplicated to form an RGB.

If two channels-exists, a blank is left in the green channel, and the blue and red channel are chosen by the underlying set ordering (usually alphabetical).

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ExtractToRGB()

Method Summary

Modifier and Type	Method	Description
NamedStacks	convert(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, Logger logger)	Converts a particular set of channels.
ChannelConvertStyle	getFallback()	If a channel doesn't match an RGB pattern, this conversion-style can be used instead.
void	setFallback(ChannelConvertStyle fallback)	If a channel doesn't match an RGB pattern, this conversion-style can be used instead.

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ExtractToRGB

public ExtractToRGB()

Method Details

convert

public NamedStacks convert(Set<String> channelNames,
 ChannelGetterForTimepoint channelGetter,
 Logger logger)
                    throws OperationFailedException

Description copied from class: ChannelConvertStyle

Converts a particular set of channels.

Specified by:

convert in class ChannelConvertStyle

Parameters:

channelNames - a set of names of the channels to convert.

channelGetter - gets a particular channel at a particular time-point.

logger - the logger.

Returns:

the results of the conversion.

Throws:

OperationFailedException - if the conversion fails to successfully complete.

getFallback

public ChannelConvertStyle getFallback()

If a channel doesn't match an RGB pattern, this conversion-style can be used instead.

If unset, an error is instead thrown in this circumstances

setFallback

public void setFallback(ChannelConvertStyle fallback)

If a channel doesn't match an RGB pattern, this conversion-style can be used instead.

If unset, an error is instead thrown in this circumstances