Package org.anchoranalysis.plugin.image.task.bean.format.convertstyle

Class IndependentChannels

Object

AnchorBean<ChannelConvertStyle>

ChannelConvertStyle

IndependentChannels

public class IndependentChannels
extends ChannelConvertStyle

Converts each channel independently and creates a single-channeled stack from the conversion.

An identical channel-name is used to identify it among the outputted stacks.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
IndependentChannels()

Method Summary

Modifier and Type	Method	Description
NamedStacks	convert(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, Logger logger)	Converts a particular set of channels.
boolean	isIgnoreMissingChannel()	Iff true and we cannot find a channel in the file, we ignore it and carry on
void	setIgnoreMissingChannel(boolean ignoreMissingChannel)	Iff true and we cannot find a channel in the file, we ignore it and carry on

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

IndependentChannels

public IndependentChannels()

Method Details

convert

public NamedStacks convert(Set<String> channelNames,
 ChannelGetterForTimepoint channelGetter,
 Logger logger)
                    throws OperationFailedException

Description copied from class: ChannelConvertStyle

Converts a particular set of channels.

Specified by:

convert in class ChannelConvertStyle

Parameters:

channelNames - a set of names of the channels to convert.

channelGetter - gets a particular channel at a particular time-point.

logger - the logger.

Returns:

the results of the conversion.

Throws:

OperationFailedException - if the conversion fails to successfully complete.

isIgnoreMissingChannel

public boolean isIgnoreMissingChannel()

Iff true and we cannot find a channel in the file, we ignore it and carry on

setIgnoreMissingChannel

public void setIgnoreMissingChannel(boolean ignoreMissingChannel)

Iff true and we cannot find a channel in the file, we ignore it and carry on