Package org.anchoranalysis.plugin.image.task.bean.format.convertstyle

Class RGBIfNamesMatch

Object

AnchorBean<ChannelConvertStyle>

ChannelConvertStyle

RGBIfNamesMatch

public class RGBIfNamesMatch
extends ChannelConvertStyle

Converts a set of channels to a single RGB-stack if the channel-names match, otherwise uses fallback.

Exactly three channels must be passed to convert(java.util.Set<java.lang.String>, org.anchoranalysis.plugin.image.task.stack.ChannelGetterForTimepoint, org.anchoranalysis.core.log.Logger) with names red, green and blue (in any order).

If the above condition is not fulfilled, fallback is called instead to process the stack.

If the RGB-stack is created, it is assigned an empty-string as a name.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
RGBIfNamesMatch()

Method Summary

Modifier and Type	Method	Description
NamedStacks	convert(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, Logger logger)	Converts a particular set of channels.
ChannelConvertStyle	getFallback()	If a channel doesn't match an RGB pattern, this conversion-style can be used instead.
void	setFallback(ChannelConvertStyle fallback)	If a channel doesn't match an RGB pattern, this conversion-style can be used instead.

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

RGBIfNamesMatch

public RGBIfNamesMatch()

Method Details

convert

public NamedStacks convert(Set<String> channelNames,
 ChannelGetterForTimepoint channelGetter,
 Logger logger)
                    throws OperationFailedException

Description copied from class: ChannelConvertStyle

Converts a particular set of channels.

Specified by:

convert in class ChannelConvertStyle

Parameters:

channelNames - a set of names of the channels to convert.

channelGetter - gets a particular channel at a particular time-point.

logger - the logger.

Returns:

the results of the conversion.

Throws:

OperationFailedException - if the conversion fails to successfully complete.

getFallback

public ChannelConvertStyle getFallback()

If a channel doesn't match an RGB pattern, this conversion-style can be used instead.

If unset, an error is instead thrown in this circumstances

setFallback

public void setFallback(ChannelConvertStyle fallback)

If a channel doesn't match an RGB pattern, this conversion-style can be used instead.

If unset, an error is instead thrown in this circumstances