Package org.anchoranalysis.plugin.image.task.bean.scale

Class ScaleImageIndependently

Object

AnchorBean<Task<StackSequenceInput,NoSharedState>>

Task<StackSequenceInput,NoSharedState>

ScaleImage<NoSharedState>

ScaleImageIndependently

public class ScaleImageIndependently
extends ScaleImage<NoSharedState>

Creates a scaled copy of images, treating each image independently, and without any padding or alignment.

When given input images of identical size, it will produce outputs of identical (scaled) size.

However, when given inputs of varying size, it will usually produce outputs of varying (scaled) size.

Author:

Owen Feehan

Field Summary

Fields inherited from class org.anchoranalysis.plugin.image.task.bean.scale.ScaleImage

binary, scaleCalculator

Constructor Summary

Constructors

Constructor	Description
ScaleImageIndependently()

Method Summary

Modifier and Type	Method	Description
NoSharedState	beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<StackSequenceInput> inputs, ParametersExperiment parameters)	Called once before all calls to Task.executeJob(org.anchoranalysis.experiment.task.ParametersUnbound<T, S>).
protected Stack	scaleStack(Stack stack, Optional<ImageSizeSuggestion> suggestedSize, VoxelsResizer voxelsResizer, NoSharedState sharedState)	Produce a scaled version of a Stack, mapping each channel to a scaled version of itself.

Methods inherited from class org.anchoranalysis.plugin.image.task.bean.scale.ScaleImage

afterAllJobsAreExecuted, defaultOutputs, doJobOnInput, getInterpolator, getScaleCalculator, hasVeryQuickPerInputExecution, inputTypesExpected, isBinary, setBinary, setInterpolator, setScaleCalculator

Methods inherited from class org.anchoranalysis.experiment.bean.task.Task

executeJob, isInputCompatibleWith

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ScaleImageIndependently

public ScaleImageIndependently()

Method Details

beforeAnyJobIsExecuted

public NoSharedState beforeAnyJobIsExecuted(Outputter outputter,
 ConcurrencyPlan concurrencyPlan,
 List<StackSequenceInput> inputs,
 ParametersExperiment parameters)
                                     throws ExperimentExecutionException

Description copied from class: Task

Called once before all calls to Task.executeJob(org.anchoranalysis.experiment.task.ParametersUnbound<T, S>).

Specified by:

beforeAnyJobIsExecuted in class Task<StackSequenceInput,NoSharedState>

Parameters:

outputter - the output-manager for the experiment (not for an individual job)

concurrencyPlan - available numbers of processors that can call Task.executeJob(org.anchoranalysis.experiment.task.ParametersUnbound<T, S>)

inputs - a list of inputs, each will result in at least one call to Task.executeJob(ParametersUnbound).

parameters - the experiment-parameters.

Returns:

the shared-state that is passed to each call to Task.executeJob(org.anchoranalysis.experiment.task.ParametersUnbound<T, S>) and to Task.afterAllJobsAreExecuted(S, org.anchoranalysis.io.output.outputter.InputOutputContext).

Throws:

ExperimentExecutionException - if a fatal error occurs executing this step of the experiment.

scaleStack

protected Stack scaleStack(Stack stack,
 Optional<ImageSizeSuggestion> suggestedSize,
 VoxelsResizer voxelsResizer,
 NoSharedState sharedState)
                    throws OperationFailedException

Description copied from class: ScaleImage

Produce a scaled version of a Stack, mapping each channel to a scaled version of itself.

Specified by:

scaleStack in class ScaleImage<NoSharedState>

Parameters:

stack - the stack before scaling.

suggestedSize - the suggested-size that has been passed into the task.

voxelsResizer - how to resize the voxels in a channel.

sharedState - the shared-state of the task.

Returns:

the scaled version of the stack.

Throws:

OperationFailedException - if the scaling operation fails.