Package org.anchoranalysis.plugin.image.task.feature

Class FeatureResultsAndThumbnails

Object

FeatureResultsAndThumbnails

public class FeatureResultsAndThumbnails
extends Object

A collection of results from feature calculation, and associated thumbnails.

It supports concurrent access by multiple threads.

The following outputs are produced:

Output Name	Default?	Description
thumbnails	yes	a small picture for each row in the features CSV illustrating its content.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
FeatureResultsAndThumbnails(FeatureOutputMetadata outputMetadata, FeatureExporterContext context)	Creates a new FeatureResultsAndThumbnails.

Method Summary

Modifier and Type	Method	Description
void	add(CheckedSupplier<LabelledResultsVector,OperationFailedException> resultToAdd, CheckedSupplier<Optional<DisplayStack>,OperationFailedException> thumbnail)	Adds results, together with a thumbnail.
void	closeAnyOpenIO()	Closes any open IO and removes redundant structures stored in memory.
void	writeGroupedResults(Optional<NamedFeatureStore<FeatureInputResults>> featuresAggregate, boolean includeGroups, Function<InputOutputContext,FeatureCSVWriterFactory> csvWriterCreator, InputOutputContext context)	Writes all the results that have been collected as a CSV file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FeatureResultsAndThumbnails

public FeatureResultsAndThumbnails(FeatureOutputMetadata outputMetadata,
 FeatureExporterContext context)
                            throws OutputWriteFailedException

Creates a new FeatureResultsAndThumbnails.

Parameters:

outputMetadata - metadata for feature output.

context - the context for feature exporting operations.

Throws:

OutputWriteFailedException - if there's an error setting up the output.

Method Details

add

public void add(CheckedSupplier<LabelledResultsVector,OperationFailedException> resultToAdd,
 CheckedSupplier<Optional<DisplayStack>,OperationFailedException> thumbnail)
         throws OperationFailedException

Adds results, together with a thumbnail.

Note that in order for the sequence numbers to match the order in the feature table, a thumbnail should be present for all results, or for no results, but never partially.

The results are only calculated if any of the relevant outputs are enabled. Similarly with the thumbnails.

Parameters:

resultToAdd - supplies the results to add, which may or may not be called, depending on what outputs are enabled.

thumbnail - supplies the thumbnail to write, which may or may not be called, depending on what outputs are enabled.

Throws:

OperationFailedException - if the operation cannot be successfully completed.

writeGroupedResults

public void writeGroupedResults(Optional<NamedFeatureStore<FeatureInputResults>> featuresAggregate,
 boolean includeGroups,
 Function<InputOutputContext,FeatureCSVWriterFactory> csvWriterCreator,
 InputOutputContext context)
                         throws OutputWriteFailedException

Writes all the results that have been collected as a CSV file.

Parameters:

featuresAggregate - features that can be used for generating additional "aggregated" exports.

includeGroups - if true a group-column is included in the CSV file and the group exports occur, otherwise not.

csvWriterCreator - creates a FeatureCSVWriterFactory for a particular InputOutputContext.

context - the InputOutputContext for input/output operations.

Throws:

OutputWriteFailedException - if there's an error writing the output.

closeAnyOpenIO

public void closeAnyOpenIO()
                    throws IOException

Closes any open IO and removes redundant structures stored in memory.

Throws:

IOException - if the close operation cannot successfully complete.