Package org.anchoranalysis.plugin.io.bean.channel.map

Class Autoname

Object

AnchorBean<ChannelMapCreator>

ChannelMapCreator

Autoname

public class Autoname
extends ChannelMapCreator

Names of the channels from the metadata if it exists, or after RGB, or by index.

Naming rules - in order of priority:

1. The channel name from the metadata.
2. red, green or blue if it's RGB.
3. channel-%d where %d is the index of the channel.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
Autoname()

Method Summary

Modifier and Type	Method	Description
ChannelMap	create(OpenedImageFile openedFile, Logger logger)	Creates the ChannelMap.

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Autoname

public Autoname()

Method Details

create

public ChannelMap create(OpenedImageFile openedFile,
 Logger logger)
                  throws CreateException

Description copied from class: ChannelMapCreator

Creates the ChannelMap.

Specified by:

create in class ChannelMapCreator

Parameters:

openedFile - an opened image-file containing Channels.

logger - a logger for recording informative or error messages.

Returns:

a ChannelMap that assigns names to channels in openedFile.

Throws:

CreateException - if the ChannelMap cannot be successfully created.