Package org.anchoranalysis.plugin.io.bean.input.stack

Class ConvertNamedChannelsToStack

Object

AnchorBean<InputManager<StackSequenceInput>>

InputManager<StackSequenceInput>

ConvertNamedChannelsToStack

public class ConvertNamedChannelsToStack
extends InputManager<StackSequenceInput>

Manager that converts (one channel) NamedChannelsInput to StackSequenceInput.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ConvertNamedChannelsToStack()

Method Summary

Modifier and Type	Method	Description
String	getChannelName()	By default all channels are converted into a stack.
InputManager<NamedChannelsInput>	getInput()
int	getTimeIndex()
InputsWithDirectory<StackSequenceInput>	inputs(InputManagerParameters parameters)	Creates a list of inputs given particular parameters.
void	setChannelName(String channelName)	By default all channels are converted into a stack.
void	setInput(InputManager<NamedChannelsInput> input)
void	setTimeIndex(int timeIndex)

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ConvertNamedChannelsToStack

public ConvertNamedChannelsToStack()

Method Details

inputs

public InputsWithDirectory<StackSequenceInput> inputs(InputManagerParameters parameters)
                                               throws InputReadFailedException

Description copied from class: InputManager

Creates a list of inputs given particular parameters.

Specified by:

inputs in class InputManager<StackSequenceInput>

Parameters:

parameters - the parameters.

Returns:

the list of inputs, together with any associated parent directory.

Throws:

InputReadFailedException - if inputs cannot be successfully read from the file-system.

getInput

public InputManager<NamedChannelsInput> getInput()

setInput

public void setInput(InputManager<NamedChannelsInput> input)

getChannelName

public String getChannelName()

By default all channels are converted into a stack. If non-empty, only this channel is converted into a stack.

setChannelName

public void setChannelName(String channelName)

By default all channels are converted into a stack. If non-empty, only this channel is converted into a stack.

getTimeIndex

public int getTimeIndex()

setTimeIndex

public void setTimeIndex(int timeIndex)