Package org.anchoranalysis.plugin.io.bean.stack.reader

Class FlattenAsChannel

Object

AnchorBean<StackReader>

StackReader

FlattenAsChannel

public class FlattenAsChannel
extends StackReader

Combines all series and frames returned by a reader by converting them into multiple channels in the same image.

It assumes that the underlying StackReader will only return images with:

1. a constant number of channels.
2. a constant number of frames.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
FlattenAsChannel()

Method Summary

Modifier and Type	Method	Description
StackReader	getStackReader()	Reads the image that is subsequently flattened.
OpenedImageFile	openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)	Opens a file containing one or more images.
void	setStackReader(StackReader stackReader)	Reads the image that is subsequently flattened.

Methods inherited from class org.anchoranalysis.image.io.bean.stack.reader.StackReader

readStack

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

FlattenAsChannel

public FlattenAsChannel()

Method Details

openFile

public OpenedImageFile openFile(Path path,
 ExecutionTimeRecorder executionTimeRecorder)
                         throws ImageIOException

Description copied from class: StackReader

Opens a file containing one or more images.

This method should run as computationally quicky as possible. Image voxels should not yet be read.

Specified by:

openFile in class StackReader

Parameters:

path - where the file is located.

executionTimeRecorder - records the execution-times of certain operations.

Returns:

an interface to the opened file that should be closed when no longer in use.

Throws:

ImageIOException - if the file cannot be read.

getStackReader

public StackReader getStackReader()

Reads the image that is subsequently flattened.

setStackReader

public void setStackReader(StackReader stackReader)

Reads the image that is subsequently flattened.