Package org.anchoranalysis.plugin.io.bean.stack.reader

Class MultiFileReader

Object

AnchorBean<StackReader>

StackReader

MultiFileReader

public class MultiFileReader
extends StackReader

Constructor Summary

Constructors

Constructor	Description
MultiFileReader()

Method Summary

Modifier and Type	Method	Description
FilePathParser	getFilePathParser()
int	getNavigateHigherDirectories()	Search x number directories higher than file.
String	getRegExDirectory()	If non-empty a regular-expression is applied to directories.
String	getRegExFile()	If non-empty a regular-expression is applied to files.
StackReader	getStackReader()
boolean	isRecurseSubfolders()
OpenedImageFile	openFile(Path filePath, ExecutionTimeRecorder executionTimeRecorder)	Opens a file containing one or more images.
void	setFilePathParser(FilePathParser filePathParser)
void	setNavigateHigherDirectories(int navigateHigherDirectories)	Search x number directories higher than file.
void	setRecurseSubfolders(boolean recurseSubfolders)
void	setRegExDirectory(String regExDirectory)	If non-empty a regular-expression is applied to directories.
void	setRegExFile(String regExFile)	If non-empty a regular-expression is applied to files.
void	setStackReader(StackReader stackReader)

Methods inherited from class org.anchoranalysis.image.io.bean.stack.reader.StackReader

readStack

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MultiFileReader

public MultiFileReader()

Method Details

openFile

public OpenedImageFile openFile(Path filePath,
 ExecutionTimeRecorder executionTimeRecorder)
                         throws ImageIOException

Description copied from class: StackReader

Opens a file containing one or more images.

This method should run as computationally quicky as possible. Image voxels should not yet be read.

Specified by:

openFile in class StackReader

Parameters:

filePath - where the file is located.

executionTimeRecorder - records the execution-times of certain operations.

Returns:

an interface to the opened file that should be closed when no longer in use.

Throws:

ImageIOException - if the file cannot be read.

getFilePathParser

public FilePathParser getFilePathParser()

setFilePathParser

public void setFilePathParser(FilePathParser filePathParser)

getStackReader

public StackReader getStackReader()

setStackReader

public void setStackReader(StackReader stackReader)

isRecurseSubfolders

public boolean isRecurseSubfolders()

setRecurseSubfolders

public void setRecurseSubfolders(boolean recurseSubfolders)

getNavigateHigherDirectories

public int getNavigateHigherDirectories()

Search x number directories higher than file.

setNavigateHigherDirectories

public void setNavigateHigherDirectories(int navigateHigherDirectories)

Search x number directories higher than file.

getRegExFile

public String getRegExFile()

If non-empty a regular-expression is applied to files.

setRegExFile

public void setRegExFile(String regExFile)

If non-empty a regular-expression is applied to files.

getRegExDirectory

public String getRegExDirectory()

If non-empty a regular-expression is applied to directories.

setRegExDirectory

public void setRegExDirectory(String regExDirectory)

If non-empty a regular-expression is applied to directories.