Package org.anchoranalysis.plugin.io.bean.stack.reader

Class RejectIfConditionXYResolution

Object

AnchorBean<StackReader>

StackReader

RejectIfConditionXYResolution

public class RejectIfConditionXYResolution
extends StackReader

If the XY resolution of an opened-image meets a certain condition then the resolution is scaled by a factor.

This is useful for correcting situations where there has been a unit mixup by the StackReader.

It assumes the X and Y resolution are equal. Throws an error otherwise.

If no image-resolution is known, an error will be thrown.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
RejectIfConditionXYResolution()

Method Summary

Modifier and Type	Method	Description
RelationToThreshold	getRelation()	A predicate defined by the relationship of the XY-resolution to a constant threshold.
StackReader	getStackReader()	Reads an image before a resolution is imposed.
OpenedImageFile	openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)	Opens a file containing one or more images.
void	setRelation(RelationToThreshold relation)	A predicate defined by the relationship of the XY-resolution to a constant threshold.
void	setStackReader(StackReader stackReader)	Reads an image before a resolution is imposed.

Methods inherited from class org.anchoranalysis.image.io.bean.stack.reader.StackReader

readStack

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

RejectIfConditionXYResolution

public RejectIfConditionXYResolution()

Method Details

openFile

public OpenedImageFile openFile(Path path,
 ExecutionTimeRecorder executionTimeRecorder)
                         throws ImageIOException

Description copied from class: StackReader

Opens a file containing one or more images.

This method should run as computationally quicky as possible. Image voxels should not yet be read.

Specified by:

openFile in class StackReader

Parameters:

path - where the file is located.

executionTimeRecorder - records the execution-times of certain operations.

Returns:

an interface to the opened file that should be closed when no longer in use.

Throws:

ImageIOException - if the file cannot be read.

getStackReader

public StackReader getStackReader()

Reads an image before a resolution is imposed.

setStackReader

public void setStackReader(StackReader stackReader)

Reads an image before a resolution is imposed.

getRelation

public RelationToThreshold getRelation()

A predicate defined by the relationship of the XY-resolution to a constant threshold.

setRelation

public void setRelation(RelationToThreshold relation)

A predicate defined by the relationship of the XY-resolution to a constant threshold.