Package org.anchoranalysis.plugin.points.bean.convexhull

Class ConvexHull2D

Object

AnchorBean<MaskProvider>

InitializableBean<MaskProvider,ImageInitialization>

ImageBean<MaskProvider>

BeanProviderAsStackBase<MaskProvider,Mask>

MaskProvider

MaskProviderUnary

ConvexHullBase

ConvexHull2D

All Implemented Interfaces:

Provider<Mask>, ProviderAsStack

public class ConvexHull2D
extends ConvexHullBase

Sets particular voxels to high only if they exist on the convex-hull of the outline of a mask.

All other voxels are low.

Uses the Gift wrap algorithm taken from FIJI's PolygonRoi.java

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ConvexHull2D()

Method Summary

Modifier and Type	Method	Description
protected Mask	createFromMask(Mask mask, Mask outline)	Creates a convex hull from a mask and its outline.

Methods inherited from class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHullBase

createFromMask, isErodeAtBoundary, setErodeAtBoundary

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProviderUnary

get, getMask, setMask

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ConvexHull2D

public ConvexHull2D()

Method Details

createFromMask

protected Mask createFromMask(Mask mask,
 Mask outline)
                       throws ProvisionFailedException

Description copied from class: ConvexHullBase

Creates a convex hull from a mask and its outline.

Specified by:

createFromMask in class ConvexHullBase

Parameters:

mask - the input Mask

outline - the outline Mask of the input mask

Returns:

the convex hull Mask

Throws:

ProvisionFailedException - if the convex hull creation fails