Package org.anchoranalysis.plugin.points.bean.convexhull

Class ConvexHullBase

Object

AnchorBean<MaskProvider>

InitializableBean<MaskProvider,ImageInitialization>

ImageBean<MaskProvider>

BeanProviderAsStackBase<MaskProvider,Mask>

MaskProvider

MaskProviderUnary

ConvexHullBase

All Implemented Interfaces:

Provider<Mask>, ProviderAsStack

Direct Known Subclasses:

ConvexHull2D, ConvexHull3D

public abstract class ConvexHullBase
extends MaskProviderUnary

Base class for convex hull implementations.

Constructor Summary

Constructors

Constructor	Description
ConvexHullBase()

Method Summary

Modifier and Type	Method	Description
Mask	createFromMask(Mask mask)	Creates a Mask given the entity provided by the delegate.
protected abstract Mask	createFromMask(Mask mask, Mask outline)	Creates a convex hull from a mask and its outline.
boolean	isErodeAtBoundary()	Whether to erode the mask at the boundary before finding the contour.
void	setErodeAtBoundary(boolean erodeAtBoundary)	Whether to erode the mask at the boundary before finding the contour.

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProviderUnary

get, getMask, setMask

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ConvexHullBase

public ConvexHullBase()

Method Details

createFromMask

public Mask createFromMask(Mask mask)
                    throws ProvisionFailedException

Description copied from class: MaskProviderUnary

Creates a Mask given the entity provided by the delegate.

Specified by:

createFromMask in class MaskProviderUnary

Parameters:

mask - the entity provided by the delegate.

Returns:

the created Mask that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

createFromMask

protected abstract Mask createFromMask(Mask mask,
 Mask outline)
                                throws ProvisionFailedException

Creates a convex hull from a mask and its outline.

Parameters:

mask - the input Mask

outline - the outline Mask of the input mask

Returns:

the convex hull Mask

Throws:

ProvisionFailedException - if the convex hull creation fails

isErodeAtBoundary

public boolean isErodeAtBoundary()

Whether to erode the mask at the boundary before finding the contour.

setErodeAtBoundary

public void setErodeAtBoundary(boolean erodeAtBoundary)

Whether to erode the mask at the boundary before finding the contour.