Uses of Package
org.anchoranalysis.spatial.box
Packages that use org.anchoranalysis.spatial.box
Package
Description
A pairing of objects from two collections (bipartite matching).
A particular stack used in feature-calculations called a
EnergyStack
together with related classes.Non-beans to specify how to form a single-image by spatially combining other images.
Beans to define entities or operate that consider Euclidian space.
Beans to specify how to form a single-image by spatially combining other images.
Aligning a
BoundingBox
to fit inside another BoundingBox
.Montages images together to completely fill the available space, while preserving aspect ratio.
Combining other images through overlaying.
Combining other images through tiling.
Conversions and operations involving Java AWT's
BufferedImage
.The
Channel
core data-class and related operations
and converters.Classes to describe the size of images or components of images both in voxels and physically.
Suggestions on a size for an image.
An image with only two permissible states.
Merges two or more entities.
Labelling elements (object-masks or similar) with unique successive integers in a channel.
An
ObjectCollection
with associated key-value
pairs.Scaling object-collections, or lists of elements with object-representations.
Operations that extract points from image data entities or vice versa.
Defines the key data object,
Stack
, and related
classes.Beans to reduce the number of results that are returned from inference, by removing overlaping
entities etc.
Non-bean classes to reduce the number of results that are returned from inference, by removing
overlapping entities etc.
Non-beans pertaining to segmentation of images via model inference.
How to represent an object-mask in a raster that is being drawn.
Beans to combine multiple stacks into a single stack before outputting.
Non-bean classes for reading / writing a
Stack
from
and to the filesystem.Base classes for generators that ultimately write only a bounding-box portion of a
Stack
to the filesystem.Data-structures to store and manipulate image raster-data or voxels.
Arithmetic operations for
Voxels
.Assigns values to some or all voxels.
The
BinaryVoxels
class and related operations.A buffer of voxel-values, usually corresponding to a single z-slice in
Voxels
.A container with voxel-buffers for each z-slice.
Converts anchor data-structures to those used by ImgLib2.
Methods to read/copy/duplicate portions of voxels.
Methods to find or count voxels that satisfy a predicate.
Creates new instances of
Voxels
and VoxelsUntyped
with specific data-types.Utilities to iterate over voxel-locations in images and sub-regions of images.
Iterating over a point's neighboring voxels.
Routines for moving a
KernelPointCursor
around the
neighboring voxels of the point.Applying a kernel via
convolution to voxels.
A region in proximity to a voxel, encompassing this voxel as well as others.
The fundamental data class that is an
ObjectMask
and related structures.Morphological operations
applied to
ObjectMask
s.Classes for calculating differnet kind of projections of voxel values across multiple buffers.
Classes for performing both a Maximum Intensity
Projection and a minimum projection.
Different interpolator methods to use when scaling voxels.
Converts the byte stream opened by Bioformats into channels of particular data-type.
Reading metadata information from files using EXIF and/or other metadata headers.
Converts to and from ImageJ data-structures for images.
Image interpolation when scaling using ImageJ.
Non-bean classes related to
Mark
s.Mark
s implementing conic sections.Mark
s implementing structures based on points.A mark after a voxel-representation has been inferred.
Overlay
s and related classes involving drawing entities on top
of an image.Beans relating to drawing an
Overlay
on an image.Collections of
Overlay
s.An implementation of an
Overlay
that draws an ObjectMask
on an image.Implementations of
ConvertChannelTo
and ConvertChannelToWithHistogram
.Implementations of
ObjectCollectionProvider
involving morphological operations.Strategies for reducing the number of elements with a list by merging/removing lower-confidence
elements that overlap.
Implementations of
ThumbnailFromObjects
.Features from combinations of
ObjectMask
s.Features that calculate how many other objects an
ObjectMask
directly neighbors.Implementations of
FeatureSingleObject
that determine if an
object lies at the border of an image.Implementations of
FeatureSingleObject
that consider an
object's bounding-box.Implementations of
CalculationPart
that that
process a single ObjectMask
.Implementations of
CalculationPart
that that
process a single ObjectMask
- with morphological operations.Encoding voxels in a watershed-transformation implementation.
Non-bean classes pertaining to determining the size of an image.
Non-bean classes pertaining to combining stacks into a single stack.
Non-bean classes to help use multiple files to represent a single
Stack
.Extracting features using OpenCV.
Conversion to/from OpenCV data-structures.
Interpolation non-beans that use OpenCV.
Axis-aligned bounding-boxes and related operations.
R-Tree data structure and related operations.
How to much to scale an entity in Cartesian space by.
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
Fixtures for creating object-masks.
Fixtures or other helper classes for testing image segmentation algorithms.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.annotation.io.assignment
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.feature.energy
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.bean.nonbean.spatial.arrangeClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.bean.spatial
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.bean.spatial.arrange
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.bean.spatial.arrange.alignClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.bean.spatial.arrange.fill
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.bean.spatial.arrange.tile
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.bufferedimage
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.channelClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.dimensionsClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.maskClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.merge
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.object.labelClassDescriptionOne or more elements, each with an individual bounding-box, and collectively with a bounding-box that fully contains them all.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.object.properties
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.object.scaleClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.points
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.core.stackClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.inference.bean.reduce
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.inference.segment
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.io.bean.object.draw
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.io.bean.stack.combine
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.io.stack
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.io.stack.output.boxClassDescriptionOne or more elements, each with an individual bounding-box, and collectively with a bounding-box that fully contains them all.A bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxelClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.arithmetic
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.assigner
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.binary
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.buffer
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.buffer.slice
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.convert.imglib2
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.extracter
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.extracter.predicate
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.factoryClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.iteratorClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.iterator.neighbor
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.kernelClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.neighborhood
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.objectClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.projection
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.projection.extrema
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.image.voxel.resizer
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.io.bioformats.copyconvert
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.io.bioformats.metadata
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.io.imagej.convert
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.io.imagej.resizer
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.mpp.mark
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.mpp.mark.conic
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.mpp.mark.points
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.mpp.mark.voxelized
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.mpp.overlay
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.overlay
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.overlay.bean
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.overlay.collection
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.overlay.object
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.plugin.image.feature.bean.object.single.borderClassDescriptionA bounding-box in two or three dimensions.The sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.plugin.image.task.size
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.plugin.image.task.slice
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.plugin.io.multifile
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.plugin.opencv.bean.feature
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.plugin.opencv.convert
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.plugin.opencv.resizer
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.spatial.boxClassDescriptionOne or more elements, each with an individual bounding-box, and collectively with a bounding-box that fully contains them all.A bounding-box in two or three dimensions.Does a bounding box contain other objects?Methods for checking intersection between a particular bounding-box and others.Performs union of a bounding-box with other entitiesThe sizes: width, height, depth etc. of an entity in 2 or 3 dimensions.
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.spatial.rtree
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.spatial.scale
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.test.image
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.test.image.object
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Classes in org.anchoranalysis.spatial.box used by org.anchoranalysis.test.image.segment