Package | Description |
---|---|
org.anchoranalysis.annotation.io.assignment |
A pairing of objects from two collections (bipartite matching).
|
org.anchoranalysis.feature.energy |
A particular stack used in feature-calculations called a
EnergyStack together with related classes. |
org.anchoranalysis.image.bean.nonbean.spatial.arrange |
Non-beans to specify how to form a single-image by spatially combining other images.
|
org.anchoranalysis.image.bean.spatial |
Beans to define entities or operate that consider Euclidian space.
|
org.anchoranalysis.image.bean.spatial.arrange |
Beans to specify how to form a single-image by spatially combining other images.
|
org.anchoranalysis.image.bean.spatial.arrange.align |
Aligning a
BoundingBox to fit inside another BoundingBox . |
org.anchoranalysis.image.bean.spatial.arrange.fill |
Montages images together to completely fill the available space, while preserving aspect ratio.
|
org.anchoranalysis.image.bean.spatial.arrange.overlay |
Combining other images through overlaying.
|
org.anchoranalysis.image.bean.spatial.arrange.tile |
Combining other images through tiling.
|
org.anchoranalysis.image.core.bufferedimage |
Conversions and operations involving Java AWT's
BufferedImage . |
org.anchoranalysis.image.core.channel |
The
Channel core data-class and related operations
and converters. |
org.anchoranalysis.image.core.dimensions |
Classes to describe the size of images or components of images both in voxels and physically.
|
org.anchoranalysis.image.core.dimensions.size.suggestion |
Suggestions on a size for an image.
|
org.anchoranalysis.image.core.mask |
An image with only two permissible states.
|
org.anchoranalysis.image.core.merge |
Merges two or more entities.
|
org.anchoranalysis.image.core.object.label |
Labelling elements (object-masks or similar) with unique successive integers in a channel.
|
org.anchoranalysis.image.core.object.properties |
An
ObjectCollection with associated key-value
pairs. |
org.anchoranalysis.image.core.object.scale |
Scaling object-collections, or lists of elements with object-representations.
|
org.anchoranalysis.image.core.points |
Operations that extract points from image data entities or vice versa.
|
org.anchoranalysis.image.core.stack |
Defines the key data object,
Stack , and related
classes. |
org.anchoranalysis.image.inference.bean.reduce |
Beans to reduce the number of results that are returned from inference, by removing overlaping
entities etc.
|
org.anchoranalysis.image.inference.bean.segment.reduce |
Non-bean classes to reduce the number of results that are returned from inference, by removing
overlapping entities etc.
|
org.anchoranalysis.image.inference.segment |
Non-beans pertaining to segmentation of images via model inference.
|
org.anchoranalysis.image.io.bean.object.draw |
How to represent an object-mask in a raster that is being drawn.
|
org.anchoranalysis.image.io.bean.stack.combine |
Beans to combine multiple stacks into a single stack before outputting.
|
org.anchoranalysis.image.io.stack |
Non-bean classes for reading / writing a
Stack from
and to the filesystem. |
org.anchoranalysis.image.io.stack.output.box |
Base classes for generators that ultimately write only a bounding-box portion of a
Stack to the filesystem. |
org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
org.anchoranalysis.image.voxel.arithmetic |
Arithmetic operations for
Voxels . |
org.anchoranalysis.image.voxel.assigner |
Assigns values to some or all voxels.
|
org.anchoranalysis.image.voxel.binary |
The
BinaryVoxels class and related operations. |
org.anchoranalysis.image.voxel.buffer |
A buffer of voxel-values, usually corresponding to a single z-slice in
Voxels . |
org.anchoranalysis.image.voxel.buffer.slice |
A container with voxel-buffers for each z-slice.
|
org.anchoranalysis.image.voxel.convert.imglib2 |
Converts anchor data-structures to those used by ImgLib2.
|
org.anchoranalysis.image.voxel.extracter |
Methods to read/copy/duplicate portions of voxels.
|
org.anchoranalysis.image.voxel.extracter.predicate |
Methods to find or count voxels that satisfy a predicate.
|
org.anchoranalysis.image.voxel.factory |
Creates new instances of
Voxels and VoxelsUntyped with specific data-types. |
org.anchoranalysis.image.voxel.iterator |
Utilities to iterate over voxel-locations in images and sub-regions of images.
|
org.anchoranalysis.image.voxel.iterator.neighbor |
Iterating over a point's neighboring voxels.
|
org.anchoranalysis.image.voxel.iterator.neighbor.kernel |
Routines for moving a
KernelPointCursor around the
neighboring voxels of the point. |
org.anchoranalysis.image.voxel.kernel |
Applying a kernel via
convolution to voxels.
|
org.anchoranalysis.image.voxel.neighborhood |
A region in proximity to a voxel, encompassing this voxel as well as others.
|
org.anchoranalysis.image.voxel.object |
The fundamental data class that is an
ObjectMask
and related structures. |
org.anchoranalysis.image.voxel.object.morphological |
Morphological operations
applied to
ObjectMask s. |
org.anchoranalysis.image.voxel.projection |
Classes for calculating differnet kind of projections of voxel values across multiple buffers.
|
org.anchoranalysis.image.voxel.projection.extrema |
Classes for performing both a Maximum Intensity
Projection and a minimum projection.
|
org.anchoranalysis.image.voxel.resizer |
Different interpolator methods to use when scaling voxels.
|
org.anchoranalysis.io.bioformats.copyconvert |
Converts the byte stream opened by Bioformats into channels of particular data-type.
|
org.anchoranalysis.io.bioformats.metadata |
Reading metadata information from files using EXIF and/or other metadata headers.
|
org.anchoranalysis.io.imagej.convert |
Converts to and from ImageJ data-structures for images.
|
org.anchoranalysis.io.imagej.resizer |
Image interpolation when scaling using ImageJ.
|
org.anchoranalysis.mpp.mark |
Non-bean classes related to
Mark s. |
org.anchoranalysis.mpp.mark.conic |
Mark s implementing conic sections. |
org.anchoranalysis.mpp.mark.points |
Mark s implementing structures based on points. |
org.anchoranalysis.mpp.mark.voxelized |
A mark after a voxel-representation has been inferred.
|
org.anchoranalysis.mpp.overlay | |
org.anchoranalysis.overlay |
Overlay s and related classes involving drawing entities on top
of an image. |
org.anchoranalysis.overlay.bean |
Beans relating to drawing an
Overlay on an image. |
org.anchoranalysis.overlay.collection |
Collections of
Overlay s. |
org.anchoranalysis.overlay.object |
An implementation of an
Overlay that draws an ObjectMask on an image. |
org.anchoranalysis.plugin.image.bean.channel.aggregator |
Implementations of
ConvertChannelTo and ConvertChannelToWithHistogram . |
org.anchoranalysis.plugin.image.bean.object.provider.morphological |
Implementations of
ObjectCollectionProvider
involving morphological operations. |
org.anchoranalysis.plugin.image.bean.object.segment.reduce |
Strategies for reducing the number of elements with a list by merging/removing lower-confidence
elements that overlap.
|
org.anchoranalysis.plugin.image.bean.thumbnail.object |
Implementations of
ThumbnailFromObjects . |
org.anchoranalysis.plugin.image.feature.bean.object.combine |
Features from combinations of
ObjectMask s. |
org.anchoranalysis.plugin.image.feature.bean.object.pair.touching |
Features that calculate how many other objects an
ObjectMask directly neighbors. |
org.anchoranalysis.plugin.image.feature.bean.object.single.border |
Implementations of
FeatureSingleObject that determine if an
object lies at the border of an image. |
org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox |
Implementations of
FeatureSingleObject that consider an
object's bounding-box. |
org.anchoranalysis.plugin.image.feature.object.calculation.single |
Implementations of
CalculationPart that that
process a single ObjectMask . |
org.anchoranalysis.plugin.image.feature.object.calculation.single.morphological |
Implementations of
CalculationPart that that
process a single ObjectMask - with morphological operations. |
org.anchoranalysis.plugin.image.segment.watershed.encoding |
Encoding voxels in a watershed-transformation implementation.
|
org.anchoranalysis.plugin.image.task.size |
Non-bean classes pertaining to determining the size of an image.
|
org.anchoranalysis.plugin.image.task.slice |
Non-bean classes pertaining to combining stacks into a single stack.
|
org.anchoranalysis.plugin.io.multifile |
Non-bean classes to help use multiple files to represent a single
Stack . |
org.anchoranalysis.plugin.mpp.bean.region |
Implementations of
MarkRegion . |
org.anchoranalysis.plugin.mpp.feature.bean.memo.pair |
Implementations of
FeaturePairMemo . |
org.anchoranalysis.plugin.opencv.bean.feature |
Extracting features using OpenCV.
|
org.anchoranalysis.plugin.opencv.convert |
Conversion to/from OpenCV data-structures.
|
org.anchoranalysis.plugin.opencv.resizer |
Interpolation non-beans that use OpenCV.
|
org.anchoranalysis.spatial.box |
Axis-aligned bounding-boxes and related operations.
|
org.anchoranalysis.spatial.rtree |
R-Tree data structure and related operations.
|
org.anchoranalysis.spatial.scale |
How to much to scale an entity in Cartesian space by.
|
org.anchoranalysis.test.image |
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
|
org.anchoranalysis.test.image.object |
Fixtures for creating object-masks.
|
org.anchoranalysis.test.image.segment |
Fixtures or other helper classes for testing image segmentation algorithms.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
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Class and Description |
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Extent
The sizes: width, height, depth etc.
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Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
|
Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
|
Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundedList
One or more elements, each with an individual bounding-box, and collectively with a bounding-box
that fully contains them all.
|
Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
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Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundedList
One or more elements, each with an individual bounding-box, and collectively with a bounding-box
that fully contains them all.
|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
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BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundedList
One or more elements, each with an individual bounding-box, and collectively with a bounding-box
that fully contains them all.
|
BoundingBox
A bounding-box in two or three dimensions.
|
BoundingBoxContains
Does a bounding box contain other objects?
|
BoundingBoxIntersection
Methods for checking intersection between a particular bounding-box and others.
|
BoundingBoxUnion
Performs union of a bounding-box with other entities
|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
Extent
The sizes: width, height, depth etc.
|
Class and Description |
---|
BoundingBox
A bounding-box in two or three dimensions.
|
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.