Uses of Class
org.anchoranalysis.spatial.point.Point3d

Packages that use Point3d

Package	Description
org.anchoranalysis.image.bean.unitvalue.distance	Converting quantities of distance between units.
org.anchoranalysis.image.core.dimensions	Classes to describe the size of images or components of images both in voxels and physically.
org.anchoranalysis.image.core.points	Operations that extract points from image data entities or vice versa.
org.anchoranalysis.image.voxel.object	The fundamental data class that is an ObjectMask and related structures.
org.anchoranalysis.mpp.bean.proposer	Proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.mark.conic	Marks implementing conic sections.
org.anchoranalysis.mpp.mark.points	Marks implementing structures based on points.
org.anchoranalysis.mpp.proposer	Non-bean classes for proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient	Implementations of FeatureSingleObject that measure an object's gradient from corresponding Channels storing the gradient.
org.anchoranalysis.plugin.points.bean.fitter	Fitting geometric structures to points.
org.anchoranalysis.spatial.box	Axis-aligned bounding-boxes and related operations.
org.anchoranalysis.spatial.orientation	Various methods to specify the orientation (general direction) of an entity.
org.anchoranalysis.spatial.point	A cartesian-coordinate, across varying primitive types, in 2D and 3D space.
org.anchoranalysis.spatial.scale	How to much to scale an entity in Cartesian space by.

Uses of Point3d in org.anchoranalysis.image.bean.unitvalue.distance

Methods in org.anchoranalysis.image.bean.unitvalue.distance with parameters of type Point3d

Modifier and Type	Method	Description
double	UnitValueDistance.resolve(Optional<UnitConverter> unitConverter, Point3d point1, Point3d point2)	Resolves the distance using the direction between two points of type Point3d.

Uses of Point3d in org.anchoranalysis.image.core.dimensions

Methods in org.anchoranalysis.image.core.dimensions with parameters of type Point3d

Modifier and Type	Method	Description
boolean	Dimensions.contains(Point3d point)	Is a point of type Point3d contained within the extent?

Uses of Point3d in org.anchoranalysis.image.core.points

Methods in org.anchoranalysis.image.core.points that return types with arguments of type Point3d

Modifier and Type	Method	Description
static List<Point3d>	PointsFromObject.listFrom3d(ObjectMask object)	A list of points from the entire object-mask as Point3d.

Methods in org.anchoranalysis.image.core.points with parameters of type Point3d

Modifier and Type	Method	Description
static BoundingBox	BoundingBoxFromPoints.fromTwoPoints(Point3d point1, Point3d point2)	Creates a bounding-box for two unordered points.

Uses of Point3d in org.anchoranalysis.image.voxel.object

Methods in org.anchoranalysis.image.voxel.object that return Point3d

Modifier and Type	Method	Description
Point3d	ObjectMask.centerOfGravity()	Calculates center-of-gravity across all axes.

Uses of Point3d in org.anchoranalysis.mpp.bean.proposer

Methods in org.anchoranalysis.mpp.bean.proposer that return types with arguments of type Point3d

Modifier and Type	Method	Description
abstract Optional<Point3d>	RadiiProposer.propose(Point3d position, RandomNumberGenerator randomNumberGenerator, Dimensions dimensions, Orientation orientation)	Proposes a new point representing radii based on the given parameters.

Methods in org.anchoranalysis.mpp.bean.proposer with parameters of type Point3d

Modifier and Type	Method	Description
abstract Optional<List<Point3i>>	PointsProposer.propose(Point3d point, Mark mark, Dimensions dimensions, RandomNumberGenerator randomNumberGenerator, ErrorNode errorNode)	Proposes a list of points based on the given parameters.
abstract Optional<Point3d>	RadiiProposer.propose(Point3d position, RandomNumberGenerator randomNumberGenerator, Dimensions dimensions, Orientation orientation)	Proposes a new point representing radii based on the given parameters.

Uses of Point3d in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark that return Point3d

Modifier and Type	Method	Description
abstract Point3d	Mark.centerPoint()	Returns the center point of the mark.
Point3d	MarkWithPosition.centerPoint()
static Point3d	PointClamper.clamp(Point3d point, Dimensions dimensions)	Clamps a double-precision point to be within the given dimensions.
Point3d	MarkWithPosition.getPosition()	The position of the mark in 3D space.

Methods in org.anchoranalysis.mpp.mark with parameters of type Point3d

Modifier and Type	Method	Description
static Point3d	PointClamper.clamp(Point3d point, Dimensions dimensions)	Clamps a double-precision point to be within the given dimensions.
void	MarkWithPosition.setPosition(Point3d position)	The position of the mark in 3D space.

Uses of Point3d in org.anchoranalysis.mpp.mark.conic

Methods in org.anchoranalysis.mpp.mark.conic that return Point3d

Modifier and Type	Method	Description
Point3d	Ellipsoid.getRadii()	The radii of the ellipsoid in 3D.
static Point3d	RadiiRandomizer.randomizeRadii(Bound bound, RandomNumberGenerator randomNumberGenerator, Optional<Resolution> resolution, boolean do3D)	Generates random radii for a conic shape.

Methods in org.anchoranalysis.mpp.mark.conic with parameters of type Point3d

Modifier and Type	Method	Description
static BoundingBox	BoundingBoxCalculator.boxFromBounds(Point3d pos, double radius, boolean do3D, Dimensions dimensions)	Calculates a bounding box for a point with a scalar radius in all dimensions.
static BoundingBox	BoundingBoxCalculator.boxFromBounds(Point3d center, cern.colt.matrix.DoubleMatrix1D radiiMatrix, boolean do3D, Dimensions dimensions)	Calculates a bounding box for a point with varying radii in each dimension (that have already been resolved into a matrix)
static Mark	MarkConicFactory.createMarkFromPoint(Point3d point, int size, boolean do3D)	Creates a mark from a double-precision 3D point.
abstract void	ConicBase.setMarksExplicit(Point3d position)	Sets the mark's position explicitly.
abstract void	ConicBase.setMarksExplicit(Point3d position, Orientation orientation)	Sets the mark's position and orientation explicitly.
abstract void	ConicBase.setMarksExplicit(Point3d pos, Orientation orientation, Point3d radii)	Sets the mark's properties explicitly.
void	Ellipse.setMarksExplicit(Point3d position)
void	Ellipse.setMarksExplicit(Point3d position, Orientation orientation)
void	Ellipse.setMarksExplicit(Point3d position, Orientation orientation, Point2d radii)	Sets the marks explicitly with position, orientation, and radii.
void	Ellipse.setMarksExplicit(Point3d position, Orientation orientation, Point3d radii)
void	Ellipsoid.setMarksExplicit(Point3d position)
void	Ellipsoid.setMarksExplicit(Point3d position, Orientation orientation)
void	Ellipsoid.setMarksExplicit(Point3d pos, Orientation orientation, Point3d radii)

Uses of Point3d in org.anchoranalysis.mpp.mark.points

Methods in org.anchoranalysis.mpp.mark.points that return Point3d

Modifier and Type	Method	Description
Point3d	LineSegment.centerPoint()
Point3d	PointList.centerPoint()
Point3d	Polygon.centerPoint()
Point3d	PolygonCurve.centerPoint()
Point3d	LineSegment.getDirectionVector()	Gets the direction vector of the line segment.
Point3d	LineSegment.getEndPoint()	Gets the end point of the line segment.
Point3d	PointListBase.getMax()	The maximum x, y, z coordinates of all the points in the list.
Point3d	PointListBase.getMin()	The minimum x, y, z coordinates of all the points in the list.
Point3d	LineSegment.getStartPoint()	Gets the start point of the line segment.

Methods in org.anchoranalysis.mpp.mark.points that return types with arguments of type Point3d

Modifier and Type	Method	Description
List<Point3d>	PointListBase.getPoints()	The list of 3D points that make up this mark.

Methods in org.anchoranalysis.mpp.mark.points with parameters of type Point3d

Modifier and Type	Method	Description
void	LineSegment.setPoints(Point3d startPoint, Point3d endPoint)	Sets the start and end points of the line segment.

Method parameters in org.anchoranalysis.mpp.mark.points with type arguments of type Point3d

Modifier and Type	Method	Description
static PointList	PointListFactory.create(List<Point3d> points)	Creates a PointList from a list of Point3d objects.
static PointList	PointListFactory.create(List<Point3d> points, int id)	Creates a PointList from a list of Point3d objects with a specified ID.

Constructor parameters in org.anchoranalysis.mpp.mark.points with type arguments of type Point3d

Modifier	Constructor	Description
	PointList(Stream<Point3d> stream)	Constructs a PointList from a stream of Point3d objects.
protected	PointListBase(Stream<Point3d> stream)	Constructs a PointListBase from a stream of Point3d objects.

Uses of Point3d in org.anchoranalysis.mpp.proposer

Methods in org.anchoranalysis.mpp.proposer that return types with arguments of type Point3d

Modifier and Type	Method	Description
Optional<Point3d>	OptionalPointProposer.propose(ProposerContext context)	Proposes a position in 3D space.

Uses of Point3d in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient that return types with arguments of type Point3d

Modifier and Type	Method	Description
protected CalculationPart<List<Point3d>,FeatureInputSingleObject>	IntensityGradientBase.gradientCalculation()	Creates a CalculationPart for calculating the gradient from the specified channels.

Uses of Point3d in org.anchoranalysis.plugin.points.bean.fitter

Methods in org.anchoranalysis.plugin.points.bean.fitter that return Point3d

Modifier and Type	Method	Description
Point3d	FitResult.getCenterPoint()	The center point of the fitted ellipsoid.

Methods in org.anchoranalysis.plugin.points.bean.fitter with parameters of type Point3d

Modifier and Type	Method	Description
void	FitResult.setCenterPoint(Point3d centerPoint)	The center point of the fitted ellipsoid.

Uses of Point3d in org.anchoranalysis.spatial.box

Methods in org.anchoranalysis.spatial.box that return Point3d

Modifier and Type	Method	Description
Point3d	BoundingBox.midpoint()	A mid-point in the bounding box, corresponding to the exact half-way point between (corner+extent)/2.

Methods in org.anchoranalysis.spatial.box with parameters of type Point3d

Modifier and Type	Method	Description
boolean	Extent.contains(Point3d point)	Is a point of type Point3d contained within the extent?
static BoundingBox	BoundingBox.createReuse(Point3d cornerMinInclusive, Point3d cornerMaxInclusive)	Creates from two double points (a minimum corner and a maximum corner).

Uses of Point3d in org.anchoranalysis.spatial.orientation

Methods in org.anchoranalysis.spatial.orientation that return Point3d

Modifier and Type	Method	Description
Point3d	RotationMatrix.column(int columnIndex)	Extracts a column from the rotation-matrix as a point.
Point3d	RotationMatrix.rotatePoint(Tuple3d point)	Performs a rotation on a single point, encoded as a Point3d.

Methods in org.anchoranalysis.spatial.orientation with parameters of type Point3d

Modifier and Type	Method	Description
static DirectionVector	DirectionVector.createBetweenTwoPoints(Point3d point1, Point3d point2)	Creates a DirectionVector representing the direction between two points of type Point3d.
void	RotationMatrix.rotatePointInplace(Point3d point)	Performs a rotation on a single point, replacing the existing value of the point.

Uses of Point3d in org.anchoranalysis.spatial.point

Methods in org.anchoranalysis.spatial.point that return Point3d

Modifier and Type	Method	Description
static Point3d	PointConverter.convertTo3d(Point2d point)	Convert a Point2d to a Point3d using 0 as the value of the Z-axis component.
static Point3d	PointConverter.double3DFromFloat(Point2f point)	Convert a Point2f to a Point3d.
static Point3d	PointConverter.doubleFromFloat(Point3f point)	Convert a Point3f to a Point3d.
static Point3d	PointConverter.doubleFromInt(Point2i point)	Convert a Point2i to a Point3d using 0 as the value of the Z-axis component.
static Point3d	PointConverter.doubleFromInt(ReadableTuple3i point)	Convert a ReadableTuple3i to a Point3d.
Point3d	Point3d.dropZ()	Creates a new point with identical x and y values, but with z set to 0.
static Point3d	Point3d.immutableAdd(Point3d point, int x, int y, int z)	Adds values to a point immutably.
static Point3d	Point3d.immutableAdd(Tuple3d tuple1, Tuple3d tuple2)	Adds two tuples immutably.
static Point3d	Point3d.immutableScale(Tuple3d tuple, int factor)	Scales a tuple immutably.
static Point3d	Point3d.immutableSubtract(Tuple3d tuple, Tuple3d toSubtract)	Subtracts a Tuple3d from a Tuple3d immutably.
static Point3d	Point3d.immutableSubtract(Tuple3i tuple, Tuple3d toSubtract)	Subtracts a Tuple3d from a Tuple3i immutably.
Point3d	Point3d.max(double val)	Element-wise maximum between this point and a scalar.
Point3d	Point3d.max(Tuple3d point)	Element-wise maximum between this point and another.
Point3d	RunningSumPoint.mean()	The mean value of all points added to the running-sum, separately for all three-dimensions.
Point3d	Point3d.min(ReadableTuple3i point)	Element-wise minimum between this point and another.
Point3d	Point3d.min(Tuple3d point)	Element-wise minimum between this point and another.

Methods in org.anchoranalysis.spatial.point that return types with arguments of type Point3d

Modifier and Type	Method	Description
static List<Point3d>	PointConverter.convert2iTo3d(List<Point2i> points)	Convert a list of Point2i to a list of Point3d.
static List<Point3d>	PointConverter.convert3fTo3d(List<Point3f> points)	Convert a list of Point3f to a list of Point3d.

Methods in org.anchoranalysis.spatial.point with parameters of type Point3d

Modifier and Type	Method	Description
double	Point3d.distance(Point3d point)	The Euclidean distance between this point and another Point3d.
double	Point3d.distanceSquared(Point3d point)	The square of the Euclidean distance between this point and another Point3d.
double	Point3i.distanceSquared(Point3d point)	The square of the Euclidean distance between this point and another Point3d.
boolean	Point3d.equalsTolerance(Point3d other, double delta)	Checks if this point is equal to another Point3d accepting a tolerance between double values.
static Point3f	PointConverter.floatFromDouble(Point3d point)	Convert a Point3d to a Point3f.
static Point3d	Point3d.immutableAdd(Point3d point, int x, int y, int z)	Adds values to a point immutably.
void	RunningSumPoint.increment(Point3d point)	Increments the running-sum by a Point3d.
static Point3i	PointConverter.intFromDouble(Point3d point, boolean round)	Convert a Point3d to a Point3i, optionally rounding values.
static Point3i	PointConverter.intFromDoubleCeil(Point3d point)	Convert a Point3d to a Point3i using the ceiling operation.
static Point3i	PointConverter.intFromDoubleFloor(Point3d point)	Convert a Point3d to a Point3i using the floor operation.

Method parameters in org.anchoranalysis.spatial.point with type arguments of type Point3d

Modifier and Type	Method	Description
static List<Point3f>	PointConverter.convert3dTo3f(List<Point3d> points)	Convert a list of Point3d to a list of Point3f.
static List<Point3i>	PointConverter.convert3i(List<Point3d> points)	Convert a list of Point3d to a list of Point3i.

Uses of Point3d in org.anchoranalysis.spatial.scale

Methods in org.anchoranalysis.spatial.scale with parameters of type Point3d

Modifier and Type	Method	Description
void	ScaleFactor.scale(Point3d point)	Multiplies a Point3d by the respective scaling-factor in each X and Y dimensions.