Uses of Class
org.anchoranalysis.spatial.scale.ScaleFactor

Packages that use ScaleFactor

Package	Description
org.anchoranalysis.annotation.mark	Annotations that use one or more marks to describe entities in an image.
org.anchoranalysis.image.bean.spatial	Beans to define entities or operate that consider Euclidian space.
org.anchoranalysis.image.core.channel	The Channel core data-class and related operations and converters.
org.anchoranalysis.image.core.dimensions	Classes to describe the size of images or components of images both in voxels and physically.
org.anchoranalysis.image.core.dimensions.size.suggestion	Suggestions on a size for an image.
org.anchoranalysis.image.core.mask	An image with only two permissible states.
org.anchoranalysis.image.core.object.scale	Scaling object-collections, or lists of elements with object-representations.
org.anchoranalysis.image.core.object.scale.method	Scaling elements with an associated ObjectMask either collectively or independently.
org.anchoranalysis.image.inference	Inference of machine learning models on images.
org.anchoranalysis.image.io.stack.output.box	Base classes for generators that ultimately write only a bounding-box portion of a Stack to the filesystem.
org.anchoranalysis.image.voxel	Data-structures to store and manipulate image raster-data or voxels.
org.anchoranalysis.image.voxel.object	The fundamental data class that is an ObjectMask and related structures.
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.mark.conic	Marks implementing conic sections.
org.anchoranalysis.mpp.mark.points	Marks implementing structures based on points.
org.anchoranalysis.plugin.image.bean.scale	Implementations of ScaleCalculator for calculating a scaling-factor from dimensions.
org.anchoranalysis.plugin.image.task.size	Non-bean classes pertaining to determining the size of an image.
org.anchoranalysis.spatial.box	Axis-aligned bounding-boxes and related operations.
org.anchoranalysis.spatial.scale	How to much to scale an entity in Cartesian space by.

Uses of ScaleFactor in org.anchoranalysis.annotation.mark

Methods in org.anchoranalysis.annotation.mark with parameters of type ScaleFactor

Modifier and Type	Method	Description
void	DualMarksAnnotation.scaleXY(ScaleFactor scaleFactor)	Scales the marks in the annotation in X and Y dimensions.

Uses of ScaleFactor in org.anchoranalysis.image.bean.spatial

Methods in org.anchoranalysis.image.bean.spatial that return ScaleFactor

Modifier and Type	Method	Description
abstract ScaleFactor	ScaleCalculator.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)	Calculates a scaling-factor for a source image/entity of particular dimensions.

Uses of ScaleFactor in org.anchoranalysis.image.core.channel

Methods in org.anchoranalysis.image.core.channel with parameters of type ScaleFactor

Modifier and Type	Method	Description
Channel	Channel.scaleXY(ScaleFactor scaleFactor, VoxelsResizer resizer)	Resizes the dimensions of the channel, by scaling the existing size by a factor.

Uses of ScaleFactor in org.anchoranalysis.image.core.dimensions

Methods in org.anchoranalysis.image.core.dimensions with parameters of type ScaleFactor

Modifier and Type	Method	Description
Resolution	Resolution.scaleXY(ScaleFactor scaleFactor)	Multiplies the X and Y components of the resolution by a factor.
Dimensions	Dimensions.scaleXYBy(ScaleFactor scaleFactor)	Scales the X- and Y- dimensions by a scaling-factor.

Uses of ScaleFactor in org.anchoranalysis.image.core.dimensions.size.suggestion

Methods in org.anchoranalysis.image.core.dimensions.size.suggestion that return ScaleFactor

Modifier and Type	Method	Description
ScaleFactor	ImageSizeSuggestion.calculateScaleFactor(Optional<Extent> extentToBeScaled)	Calculates the scaling factor.

Methods in org.anchoranalysis.image.core.dimensions.size.suggestion that return types with arguments of type ScaleFactor

Modifier and Type	Method	Description
Optional<ScaleFactor>	ImageSizeSuggestion.uniformScaleFactor()	A ScaleFactor, if one exists, that is applied uniformally, independent of the Extent to be scaled.

Uses of ScaleFactor in org.anchoranalysis.image.core.mask

Methods in org.anchoranalysis.image.core.mask with parameters of type ScaleFactor

Modifier and Type	Method	Description
Mask	Mask.scaleXY(ScaleFactor scaleFactor)	Creates a new Mask whose X- and Y- dimensions are scaled by scaleFactor.

Uses of ScaleFactor in org.anchoranalysis.image.core.object.scale

Methods in org.anchoranalysis.image.core.object.scale with parameters of type ScaleFactor

Modifier and Type	Method	Description
static <T> ScaledElements<T>	Scaler.scaleElements(List<T> elements, ScaleFactor factor, boolean overlappingObjects, Extent clipTo, AccessObjectMask<T> access)	Scales every element in a list collectively, ensuring the results remain inside a particular region.
static ScaledElements<ObjectMask>	Scaler.scaleObjects(ObjectCollection objects, ScaleFactor factor)	Scales every object-mask in a collection collectively.
static ScaledElements<ObjectMask>	Scaler.scaleObjects(ObjectCollection objects, ScaleFactor factor, boolean overlappingObjects, Optional<UnaryOperator<ObjectMask>> preOperation, Optional<UnaryOperator<ObjectMask>> postOperation)	Scales every object-mask in a collection collectively (if not overlappjng), allowing for additional manipulation before and after scaling.
static ScaledElements<ObjectMask>	Scaler.scaleObjects(ObjectCollection objects, ScaleFactor factor, boolean overlappingObjects, Extent clipTo)	Scales every object-mask in a collection collectively, ensuring the results remain inside a particular region.

Constructors in org.anchoranalysis.image.core.object.scale with parameters of type ScaleFactor

Modifier	Constructor	Description
	ScaledElements(List<T> elements, ScaleFactor scaleFactor, ObjectScalingMethod scalingMethod, Optional<UnaryOperator<T>> preOperation, Optional<UnaryOperator<T>> postOperation, AccessObjectMask<T> access)	Creates elements to be scaled.

Uses of ScaleFactor in org.anchoranalysis.image.core.object.scale.method

Methods in org.anchoranalysis.image.core.object.scale.method with parameters of type ScaleFactor

Modifier and Type	Method	Description
<T> Map<T,T>	ObjectScalingMethod.scaleElements(List<T> elements, ScaleFactor scaleFactor, Optional<UnaryOperator<T>> preOperation, Optional<UnaryOperator<T>> postOperation, AccessObjectMask<T> access)	Applies a scaling factor to elements, where each element is associated with a unique ObjectMask.
default <T> Map<T,T>	ObjectScalingMethod.scaleElements(List<T> elements, ScaleFactor scaleFactor, AccessObjectMask<T> access)	Applies a scaling factor to elements, where each element is associated with a unique ObjectMask.

Uses of ScaleFactor in org.anchoranalysis.image.inference

Methods in org.anchoranalysis.image.inference that return ScaleFactor

Modifier and Type	Method	Description
ScaleFactor	ImageInferenceContext.getScaleFactor()	The inverse of the scaling-factor applied to reduce unscaledDimensions to the input-matrix used for inference.

Methods in org.anchoranalysis.image.inference that return types with arguments of type ScaleFactor

Modifier and Type	Method	Description
final DualScale<Optional<ScaleFactor>>	ImageInferenceContext.scaleFactorUpscale()	The scaling-factors needed to upscale the model output to match the desired scale.

Constructors in org.anchoranalysis.image.inference with parameters of type ScaleFactor

Modifier	Constructor	Description
	ImageInferenceContext(DualScale<Dimensions> dimensions, ScaleFactor scaleFactor, Optional<List<String>> classLabels, VoxelsResizer resizer, ExecutionTimeRecorder executionTimeRecorder, Logger logger)	Creates a new ImageInferenceContext instance.

Uses of ScaleFactor in org.anchoranalysis.image.io.stack.output.box

Methods in org.anchoranalysis.image.io.stack.output.box with parameters of type ScaleFactor

Modifier and Type	Method	Description
static ScaleableBackground	ScaleableBackground.scaleBy(DisplayStack stack, ScaleFactor scaleFactor, VoxelsResizer resizer)	Creates a background from a stack with scaling.

Uses of ScaleFactor in org.anchoranalysis.image.voxel

Methods in org.anchoranalysis.image.voxel with parameters of type ScaleFactor

Modifier and Type	Method	Description
BoundedVoxels<T>	BoundedVoxels.scale(ScaleFactor scaleFactor, VoxelsResizer resizer, Optional<Extent> clipTo)	Creates a scaled-version (in XY dimensions only) of the current bounding-box.

Uses of ScaleFactor in org.anchoranalysis.image.voxel.object

Methods in org.anchoranalysis.image.voxel.object with parameters of type ScaleFactor

Modifier and Type	Method	Description
ObjectMask	ObjectMask.scale(ScaleFactor factor)	Produces a scaled-version of an object-mask.
ObjectMask	ObjectMask.scale(ScaleFactor factor, Optional<Extent> clipTo)	Produces a scaled-version of an object-mask.

Uses of ScaleFactor in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark with parameters of type ScaleFactor

Modifier and Type	Method	Description
abstract void	Mark.scale(ScaleFactor scaleFactor)	Scales the mark in X and Y dimensions.
void	MarkWithPosition.scale(ScaleFactor scaleFactor)
void	MarkCollection.scaleXY(ScaleFactor scaleFactor)	Scales all marks in the collection in X and Y dimensions.

Constructor parameters in org.anchoranalysis.mpp.mark with type arguments of type ScaleFactor

Modifier	Constructor	Description
	MarkToObjectConverter(Optional<ScaleFactor> scaleFactor, Dimensions dimensions)	Create for particular Dimensions with a scaling-factor.
	MarkToObjectConverter(Optional<ScaleFactor> scaleFactor, Dimensions dimensions, RegionMembershipWithFlags regionMembership, BinaryValuesByte binaryValuesOut)	Creates a new MarkToObjectConverter instance.

Uses of ScaleFactor in org.anchoranalysis.mpp.mark.conic

Methods in org.anchoranalysis.mpp.mark.conic with parameters of type ScaleFactor

Modifier and Type	Method	Description
void	Ellipse.scale(ScaleFactor scaleFactor)
void	Ellipsoid.scale(ScaleFactor scaleFactor)
void	MarkWithPositionAndSingleRadius.scale(ScaleFactor scaleFactor)	Objects are scaled in pre-rotated position.

Uses of ScaleFactor in org.anchoranalysis.mpp.mark.points

Methods in org.anchoranalysis.mpp.mark.points with parameters of type ScaleFactor

Modifier and Type	Method	Description
void	LineSegment.scale(ScaleFactor scaleFactor)
void	PointList.scale(ScaleFactor scaleFactor)	Scales the points in the list by a given scale factor.
void	Polygon.scale(ScaleFactor scaleFactor)
void	PolygonCurve.scale(ScaleFactor scaleFactor)
void	RotatableBoundingBox.scale(ScaleFactor scaleFactor)

Uses of ScaleFactor in org.anchoranalysis.plugin.image.bean.scale

Methods in org.anchoranalysis.plugin.image.bean.scale that return ScaleFactor

Modifier and Type	Method	Description
ScaleFactor	ConstantScaleFactor.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	FitTo.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	Invert.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	MinimumXYResolution.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	ToDimensions.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	ToSuggested.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)

Uses of ScaleFactor in org.anchoranalysis.plugin.image.task.size

Methods in org.anchoranalysis.plugin.image.task.size with parameters of type ScaleFactor

Modifier and Type	Method	Description
SizeMapping	SizeMapping.scaleXYBy(ScaleFactor scaleFactor)	Scales the XY dimensions the factor.

Uses of ScaleFactor in org.anchoranalysis.spatial.box

Methods in org.anchoranalysis.spatial.box with parameters of type ScaleFactor

Modifier and Type	Method	Description
BoundingBox	BoundingBox.scale(ScaleFactor scaleFactor)	Scales the bounding-box, both the corner-point and the extent.
BoundingBox	BoundingBox.scale(ScaleFactor scaleFactor, Extent extentToAssign)	Scales the bounding-box corner-point, and assigns a new extent.
BoundingBox	BoundingBox.scaleClampTo(ScaleFactor scaleFactor, Extent clampTo)	Scales the bounding-box, both the corner-point and the extent - ensuring it remains inside a containing-extent.
Extent	Extent.scaleXYBy(ScaleFactor scaleFactor, boolean round)	Scales the X- and Y- dimensions by a scaling-factor.

Uses of ScaleFactor in org.anchoranalysis.spatial.scale

Methods in org.anchoranalysis.spatial.scale that return ScaleFactor

Modifier and Type	Method	Description
ScaleFactor	ScaleFactorInt.asScaleFactor()	Converts to a ScaleFactor that accepts floating-point values.
ScaleFactor	ScaleFactor.invert()	Build a new scale factor where each dimension is set to the reciprocal of its current value.
static ScaleFactor	RelativeScaleCalculator.relativeScale(Extent source, Extent target)	Calculates a scaling factor so as to scale source to target.
static ScaleFactor	RelativeScaleCalculator.relativeScale(Extent source, Extent target, boolean preserveAspectRatio)	Multiplexes between RelativeScaleCalculator.relativeScalePreserveAspectRatio(Extent, Extent) and RelativeScaleCalculator.relativeScale(Extent, Extent).
static ScaleFactor	RelativeScaleCalculator.relativeScalePreserveAspectRatio(Extent source, Extent target)	Calculates a scaling factor so as to maximally scale source to target - while preserving the aspect ratio.

Methods in org.anchoranalysis.spatial.scale with parameters of type ScaleFactor

Modifier and Type	Method	Description
static Point3i	Scaler.scale(ScaleFactor scalingFactor, Point3i point)	Scales a point in XY by multiplying each dimension by its corresponding scaling-factor.
static Point3i	Scaler.scaleCeil(ScaleFactor scalingFactor, Point3i point)	Scales a point in XY by multiplying each dimension by its corresponding scaling-factor.