Uses of Package
org.anchoranalysis.core.log

Packages that use org.anchoranalysis.core.log
Package
Description
org.anchoranalysis.annotation.io
Reading and writing annotations to the filesystem.
org.anchoranalysis.annotation.io.image.findable
The outcome of searching for annotations or images on the file-system.
org.anchoranalysis.bean
Defining, loading, initializing Anchor Beans.
org.anchoranalysis.bean.initializable
Initializing beans with particular parameters, including recursively.
org.anchoranalysis.bean.initializable.property
Initializating a bean with parameters.
org.anchoranalysis.core.identifier.provider.store
Data structures like NamedProvider with supporting for adding new elements.
org.anchoranalysis.core.log
Interfaces to log messages, both information and error messages.
org.anchoranalysis.core.log.error
Mechanism for reporting errors (exceptions/throwables) to the user.
org.anchoranalysis.core.system
Utilities for interacting with the operating system or computer system generally
org.anchoranalysis.core.time
Recording the execution-time of operations for profiling.
org.anchoranalysis.experiment.bean.log
Different approaches to where messages on the progress/status of an experiment are logged to.
org.anchoranalysis.experiment.io
Interfaces for replacing attributes of an experiment: input, output, task etc.
org.anchoranalysis.experiment.log
Helpful classes for logging.
org.anchoranalysis.experiment.task
Non-bean classes related to a Task.
org.anchoranalysis.experiment.task.processor
Non-bean classes related to JobProcessor.
org.anchoranalysis.feature.bean.list
A feature-list (custom list type for features) and associated providers.
org.anchoranalysis.feature.calculate.cache
Classes to cache feature-results or parts of feature-results that occur repeatedly among features or across calculations of the same feature.
org.anchoranalysis.feature.initialization
Initialization parameters used for beans in org.anchoranalysis.feature.bean.
org.anchoranalysis.feature.session
A defined context in which one or more features are provided inputs and produce results.
org.anchoranalysis.feature.session.cache
Creates a FeatureCalculationCache to use during feature-calculations.
org.anchoranalysis.feature.session.replace
Strategies on whether to reuse or invalidate a feature-input's cache.
org.anchoranalysis.feature.shared
Features shared for referencing among calculations.
org.anchoranalysis.image.bean.channel
Base classes for performing operations on Channels.
org.anchoranalysis.image.bean.nonbean.init
Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
org.anchoranalysis.image.feature.calculator
Implementations of FeatureCalculatorMulti related to images, especially to create tables of feature-calculations.
org.anchoranalysis.image.feature.calculator.merged
A particular implementation of FeatureCalculatorMulti for feature-calculations based upon pairs of image-objects.
org.anchoranalysis.image.inference
Inference of machine learning models on images.
org.anchoranalysis.image.inference.bean.segment.instance
Instance-segmentation of a Stack.
org.anchoranalysis.image.io.bean.channel
Beans pertaining to reading Channels as input.
org.anchoranalysis.image.io.bean.stack.writer
Bean classes for writing raster-files to the filesystem.
org.anchoranalysis.image.io.channel.input
Non-bean classes for reading a Channel from the filesystem.
org.anchoranalysis.image.io.channel.map
Non-bean classes for a mapping of names to Channels.
org.anchoranalysis.image.io.object.output.hdf5
Writing an ObjectCollection to the filesystem in HDF5 format.
org.anchoranalysis.image.io.stack
Non-bean classes for reading / writing a Stack from and to the filesystem.
org.anchoranalysis.image.io.stack.input
Non-bean classes for reading a Stack from the filesystem.
org.anchoranalysis.image.io.stack.output.generator
Base classes for generators that ultimately write a Stack to the filesystem.
org.anchoranalysis.inference.concurrency
Specifying how many CPUs and GPUs can be allocated for some purpose.
org.anchoranalysis.io.generator
Base-classes and utilities for generators, which write different types of objects to the file system.
org.anchoranalysis.io.generator.serialized
Generators for writing serialized objects.
org.anchoranalysis.io.generator.tabular
Generators for writing tabular data, including CSV.
org.anchoranalysis.io.generator.text
Generators for writing textual data, including strings.
org.anchoranalysis.io.generator.xml
Generators for writing XML data.
org.anchoranalysis.io.input.bean
Beans related to collecting inputs from the file-system for an experiment.
org.anchoranalysis.io.input.file
Non-bean classes that relate to using files during inputting.
org.anchoranalysis.io.output.outputter
Classes for outputting to particular directories.
org.anchoranalysis.io.output.writer
Allows a generators to write element(s) to the filesystem.
org.anchoranalysis.launcher
Parent package and entry-point classes for the Anchor command-line launcher application.
org.anchoranalysis.launcher.executor
Runs a particular experiment after identifying necessary paths and input files.
org.anchoranalysis.launcher.run
Parses command-line arguments and runs an experiment.
org.anchoranalysis.mpp.feature.addcriteria
Criteria for adding edges during optimization of marked-point-processes.
org.anchoranalysis.mpp.feature.energy.saved
Saved snapshots of energy-calculations.
org.anchoranalysis.mpp.feature.energy.scheme
Factorized form of storing the energy during an energy-minimization optimization scheme.
org.anchoranalysis.mpp.init
Parameters used to initialize certain types of beans.
org.anchoranalysis.mpp.io.input
Non-beans for reading data structures related to marked point processes from the file system.
org.anchoranalysis.mpp.mark
Non-bean classes related to Marks.
org.anchoranalysis.plugin.image.bean.blur
Filters that perform blurring.
org.anchoranalysis.plugin.image.feature.bean.object.combine
Features from combinations of ObjectMasks.
org.anchoranalysis.plugin.image.intensity.level
Non-beans for calculating a thresholding level from itensity values.
org.anchoranalysis.plugin.image.object.merge
Merging ObjectMasks.
org.anchoranalysis.plugin.image.object.merge.condition
Conditions for merging ObjectMasks.
org.anchoranalysis.plugin.image.object.merge.priority
Assigning priority when merging ObjectMasks.
org.anchoranalysis.plugin.image.task.bean.format.convertstyle
Different approaches for converting sets of channels (RGB, independently etc.) to another image format.
org.anchoranalysis.plugin.image.task.feature
Non-bean classes pertaining to Features as used in tasks.
org.anchoranalysis.plugin.image.task.stack
Non-bean classes pertaining to stacks and channels as used in tasks.
org.anchoranalysis.plugin.io.bean.channel.map
Implementations of ChannelMapCreator.
org.anchoranalysis.plugin.io.bean.input.stack
Implementations of InputManager that process Stacks.
org.anchoranalysis.plugin.io.multifile
Non-bean classes to help use multiple files to represent a single Stack.
org.anchoranalysis.plugin.mpp.shared
Shared-state use across tasks in this JAR.
org.anchoranalysis.plugin.onnx.bean.object.segment.stack
Segmenting a Stack using the ONNX Runtime to produce an ObjectCollection.
org.anchoranalysis.plugin.opencv.bean.object.segment.stack
Segmentation of a Stack using OpenCV.
org.anchoranalysis.plugin.points.bean
Beans that fit or otherwise manipulate sets of points.
org.anchoranalysis.test
Testing utilities and fixtures with no greater downstream dependency than anchor-core.
org.anchoranalysis.test.experiment
Testing utilities and fixtures with no greater downstream dependency than anchor-experiment or anchor-mpp or anchor-mpp-io.
org.anchoranalysis.test.image
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io or anchor-io-bioformats or anchor-imagej.