Package | Description |
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org.anchoranalysis.annotation.io |
Reading and writing annotations to the filesystem.
|
org.anchoranalysis.annotation.io.bean |
Beans related to reading / writing / specifying annotations.
|
org.anchoranalysis.annotation.io.bean.comparer |
What to compare an annotation (ground truth) against?
|
org.anchoranalysis.annotation.io.image |
Reading and writing whole-image label annotations.
|
org.anchoranalysis.annotation.io.mark |
Reading and writing
Mark -related annotations from/to the
file-system. |
org.anchoranalysis.core.serialize |
Utilities for serializing and deserializing objects.
|
org.anchoranalysis.core.time |
Recording the execution-time of operations for profiling.
|
org.anchoranalysis.experiment.task |
Non-bean classes related to a
Task . |
org.anchoranalysis.experiment.time |
How long particular operations take to execute.
|
org.anchoranalysis.image.bean.spatial.arrange |
Beans to specify how to form a single-image by spatially combining other images.
|
org.anchoranalysis.image.bean.spatial.arrange.fill |
Montages images together to completely fill the available space, while preserving aspect ratio.
|
org.anchoranalysis.image.bean.spatial.arrange.overlay |
Combining other images through overlaying.
|
org.anchoranalysis.image.bean.spatial.arrange.tile |
Combining other images through tiling.
|
org.anchoranalysis.image.inference |
Inference of machine learning models on images.
|
org.anchoranalysis.image.inference.bean.reduce |
Beans to reduce the number of results that are returned from inference, by removing overlaping
entities etc.
|
org.anchoranalysis.image.inference.bean.segment.instance |
Instance-segmentation of a
Stack . |
org.anchoranalysis.image.inference.bean.segment.reduce |
Non-bean classes to reduce the number of results that are returned from inference, by removing
overlapping entities etc.
|
org.anchoranalysis.image.inference.segment |
Non-beans pertaining to segmentation of images via model inference.
|
org.anchoranalysis.image.io.bean.stack.metadata.reader |
Bean classes for reading
ImageMetadata from the
file-system. |
org.anchoranalysis.image.io.bean.stack.reader |
Bean classes for reading raster-files from the filesystem.
|
org.anchoranalysis.image.io.object.input |
Non-bean classes for reading an
ObjectCollection
from the filesystem. |
org.anchoranalysis.image.io.stack.input |
Non-bean classes for reading a
Stack from the
filesystem. |
org.anchoranalysis.image.voxel.resizer |
Different interpolator methods to use when scaling voxels.
|
org.anchoranalysis.io.bioformats.bean |
Beans for filesystem I/O using Bioformats.
|
org.anchoranalysis.io.input.bean |
Beans related to collecting inputs from the file-system for an experiment.
|
org.anchoranalysis.io.output.bean |
Beans for the framework around writing files to the file-system.
|
org.anchoranalysis.io.output.outputter |
Classes for outputting to particular directories.
|
org.anchoranalysis.io.output.writer |
Allows a generators to write element(s) to the filesystem.
|
org.anchoranalysis.mpp.io.bean.report.feature |
Beans for communicating feature-values from data-structures in human-readable manner.
|
org.anchoranalysis.mpp.io.marks |
Non-beans to help write visualization of
Mark s to the
filesystem. |
org.anchoranalysis.mpp.proposer |
Non-bean classes for proposing
Mark s or other data-structures
with particular attributes. |
org.anchoranalysis.mpp.segment.optimization.kernel |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization.kernel |
org.anchoranalysis.plugin.annotation.bean.comparer |
Comparing the similarity of annotations from two images to each other.
|
org.anchoranalysis.plugin.annotation.bean.strategy |
Strategies for how to annotate an image, such label per image etc.
|
org.anchoranalysis.plugin.image.bean.object.segment.reduce |
Strategies for reducing the number of elements with a list by merging/removing lower-confidence
elements that overlap.
|
org.anchoranalysis.plugin.image.bean.thumbnail.object |
Implementations of
ThumbnailFromObjects . |
org.anchoranalysis.plugin.image.feature.bean.object.combine |
Features from combinations of
ObjectMask s. |
org.anchoranalysis.plugin.image.task.bean.combine |
Combining multiple images together into a single image.
|
org.anchoranalysis.plugin.image.task.bean.grouped |
Tasks that involved stacks (usually each channel from an image) that are somehow
grouped-together.
|
org.anchoranalysis.plugin.image.task.bean.grouped.histogram |
Task(s) to export histograms of intensity values.
|
org.anchoranalysis.plugin.image.task.feature |
Non-bean classes pertaining to
Feature s as used in tasks. |
org.anchoranalysis.plugin.image.task.segment |
Non-bean classes for image-segmentation.
|
org.anchoranalysis.plugin.image.task.slice |
Non-bean classes pertaining to combining stacks into a single stack.
|
org.anchoranalysis.plugin.image.task.stack |
Non-bean classes pertaining to stacks and channels as used in tasks.
|
org.anchoranalysis.plugin.io.bean.input.stack |
Implementations of
InputManager that process Stack s. |
org.anchoranalysis.plugin.io.bean.metadata.reader |
Implementations of
ImageMetadataReader . |
org.anchoranalysis.plugin.io.bean.stack.reader |
Implementations of
StackReader . |
org.anchoranalysis.plugin.io.multifile |
Non-bean classes to help use multiple files to represent a single
Stack . |
org.anchoranalysis.plugin.opencv.bean.stack | |
org.anchoranalysis.test |
Testing utilities and fixtures with no greater downstream dependency than anchor-core.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
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Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
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Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
RecordedExecutionTimes
Recorded execution-times for operations.
|
RecordedExecutionTimes.RecordedOperation
A particular type of operation that has been recorded (en aggregate).
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
RecordedExecutionTimes
Recorded execution-times for operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
RecordedExecutionTimes
Recorded execution-times for operations.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
---|
ExecutionTimeRecorder
Records the execution-time of particular operations.
|
OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
---|
ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
|
Class and Description |
---|
ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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ExecutionTimeRecorder
Records the execution-time of particular operations.
|
Class and Description |
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OperationContext
Context objects for general operations that allow for logging and recording execution time.
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Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.