Uses of Class
org.anchoranalysis.experiment.task.ParametersExperiment

Packages that use ParametersExperiment

Package	Description
org.anchoranalysis.experiment.bean.io	Generic experiments that handle input and output in structured ways.
org.anchoranalysis.experiment.bean.processor	How a task is executed on multiple inputs.
org.anchoranalysis.experiment.bean.task	Defines a task, which is a set of operations run on an input, that may or may not generate an output.
org.anchoranalysis.experiment.task	Non-bean classes related to a Task.
org.anchoranalysis.plugin.annotation.bean.aggregate	Beans to combine two or more annotations.
org.anchoranalysis.plugin.annotation.bean.comparison	Task to compare a set of annotations to a segmentation or another set of annotations.
org.anchoranalysis.plugin.image.task.bean.combine	Combining multiple images together into a single image.
org.anchoranalysis.plugin.image.task.bean.feature	Tasks pertaining to Features.
org.anchoranalysis.plugin.image.task.bean.format	Tasks for converting image-formats.
org.anchoranalysis.plugin.image.task.bean.grouped	Tasks that involved stacks (usually each channel from an image) that are somehow grouped-together.
org.anchoranalysis.plugin.image.task.bean.labeller	Associating labels with images.
org.anchoranalysis.plugin.image.task.bean.scale	Tasks to scale an image.
org.anchoranalysis.plugin.image.task.bean.segment	Tasks to segment an image.
org.anchoranalysis.plugin.image.task.bean.slice	Tasks that process on one or more slices from a z-stack.
org.anchoranalysis.plugin.io.bean.task	Implementations of Task related to file-system I/O.
org.anchoranalysis.plugin.mpp.bean.convert	Converting from NamedChannelsInput to the input-type expected by a Task.

Uses of ParametersExperiment in org.anchoranalysis.experiment.bean.io

Methods in org.anchoranalysis.experiment.bean.io with parameters of type ParametersExperiment

Modifier and Type	Method	Description
protected Optional<TaskStatistics>	InputOutputExperiment.executeExperimentWithParameters(ParametersExperiment parameters)
protected abstract Optional<TaskStatistics>	OutputExperiment.executeExperimentWithParameters(ParametersExperiment parameters)	Executes the experiment for parameters.

Uses of ParametersExperiment in org.anchoranalysis.experiment.bean.processor

Methods in org.anchoranalysis.experiment.bean.processor with parameters of type ParametersExperiment

Modifier and Type	Method	Description
protected TaskStatistics	DebugDependentProcessor.execute(Outputter rootOutputter, List<T> inputs, ParametersExperiment parametersExperiment)
protected abstract TaskStatistics	JobProcessor.execute(Outputter rootOutputter, List<T> inputs, ParametersExperiment parametersExperiment)	Executes the task on all inputs.
protected TaskStatistics	ParallelProcessor.execute(Outputter rootOutputter, List<T> inputs, ParametersExperiment parametersExperiment)
protected TaskStatistics	SequentialProcessor.execute(Outputter rootOutputter, List<T> inputs, ParametersExperiment parametersExperiment)
TaskStatistics	JobProcessor.executeLogStatistics(Outputter rootOutputter, List<T> inputs, ParametersExperiment parametersExperiment)	Executes the task on all inputs and logs statistics about this to the file-systen.

Uses of ParametersExperiment in org.anchoranalysis.experiment.bean.task

Methods in org.anchoranalysis.experiment.bean.task with parameters of type ParametersExperiment

Modifier and Type	Method	Description
abstract S	Task.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<T> inputs, ParametersExperiment parameters)	Called once before all calls to Task.executeJob(org.anchoranalysis.experiment.task.ParametersUnbound<T, S>).
final NoSharedState	TaskWithoutSharedState.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<T> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.experiment.task

Methods in org.anchoranalysis.experiment.task that return ParametersExperiment

Modifier and Type	Method	Description
ParametersExperiment	ParametersUnbound.getParametersExperiment()

Constructors in org.anchoranalysis.experiment.task with parameters of type ParametersExperiment

Modifier	Constructor	Description
	ParametersUnbound(ParametersExperiment parametersExperiment, T input, S sharedState, boolean suppressExceptions)

Uses of ParametersExperiment in org.anchoranalysis.plugin.annotation.bean.aggregate

Methods in org.anchoranalysis.plugin.annotation.bean.aggregate with parameters of type ParametersExperiment

Modifier and Type	Method	Description
AggregateSharedState	AggregateAnnotations.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<AnnotationWithStrategy<S>> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.annotation.bean.comparison

Methods in org.anchoranalysis.plugin.annotation.bean.comparison with parameters of type ParametersExperiment

Modifier and Type	Method	Description
ComparisonSharedState<T>	CompareAnnotations.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<AnnotationComparisonInput<ProvidesStackInput>> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.combine

Methods in org.anchoranalysis.plugin.image.task.bean.combine with parameters of type ParametersExperiment

Modifier and Type	Method	Description
MontageSharedState	Montage.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<StackSequenceInput> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.feature

Methods in org.anchoranalysis.plugin.image.task.bean.feature with parameters of type ParametersExperiment

Modifier and Type	Method	Description
FeatureExporter<S>	ExportFeatures.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<T> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.format

Methods in org.anchoranalysis.plugin.image.task.bean.format with parameters of type ParametersExperiment

Modifier and Type	Method	Description
NoSharedState	ConvertImageFormat.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<NamedChannelsInput> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.grouped

Methods in org.anchoranalysis.plugin.image.task.bean.grouped with parameters of type ParametersExperiment

Modifier and Type	Method	Description
GroupedSharedState<S,T>	GroupedStackBase.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<ProvidesStackInput> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.labeller

Methods in org.anchoranalysis.plugin.image.task.bean.labeller with parameters of type ParametersExperiment

Modifier and Type	Method	Description
SharedStateFilteredImageOutput<T>	ImageAssignLabel.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<ProvidesStackInput> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.scale

Methods in org.anchoranalysis.plugin.image.task.bean.scale with parameters of type ParametersExperiment

Modifier and Type	Method	Description
CommonSize	ScaleImageCommonSize.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<StackSequenceInput> inputs, ParametersExperiment parameters)
NoSharedState	ScaleImageIndependently.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<StackSequenceInput> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.segment

Methods in org.anchoranalysis.plugin.image.task.bean.segment with parameters of type ParametersExperiment

Modifier and Type	Method	Description
SharedStateSegmentInstance<T>	SegmentInstanceWithModel.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan plan, List<StackSequenceInput> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.image.task.bean.slice

Methods in org.anchoranalysis.plugin.image.task.bean.slice with parameters of type ParametersExperiment

Modifier and Type	Method	Description
SharedStateSelectedSlice	ExtractSlice.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<NamedChannelsInput> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.io.bean.task

Methods in org.anchoranalysis.plugin.io.bean.task with parameters of type ParametersExperiment

Modifier and Type	Method	Description
CSVWriter	CombineCSV.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<FileInput> inputs, ParametersExperiment parameters)
RecordingCounter<T>	CopyFiles.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<FileWithDirectoryInput> inputs, ParametersExperiment parameters)
Summarizer<S>	SummarizeBase.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<T> inputs, ParametersExperiment parameters)

Uses of ParametersExperiment in org.anchoranalysis.plugin.mpp.bean.convert

Methods in org.anchoranalysis.plugin.mpp.bean.convert with parameters of type ParametersExperiment

Modifier and Type	Method	Description
SharedStateRememberConverted<U,S>	ConvertNamedChannels.beforeAnyJobIsExecuted(Outputter outputter, ConcurrencyPlan concurrencyPlan, List<T> inputs, ParametersExperiment parameters)