Uses of Package
org.anchoranalysis.feature.calculate
Packages that use org.anchoranalysis.feature.calculate
Package
Description
A pairing of objects from two collections (bipartite matching).
Beans pertaining to feature-calculation.
Features that are sufficiently generic to work on any input-type.
Defines base class
FeatureResults
together with
some implementations.Sub-feature units of calculation that can be cached.
Interfaces like
FeatureCalculator
but bound to
particular features.Classes to cache feature-results or parts of feature-results that occur repeatedly among features
or across calculations of the same feature.
Equivalent classes to
org.anchoranalysis.feature.calculate.part
after having been
resolved against a cache.A sub-part of the calculation of a feature, that can be cached, and reused by other features.
Base classes providing inputs to feature calculations.
A defined context in which one or more features are provided inputs and produce results.
Strategies to determine which child-cache (among hierarchy) to employ for a particular feature
calculation.
Strategies on whether to reuse or invalidate a feature-input's cache.
Beans pertaining to feature definition and calculation.
Features that operate on a
Histogram
.Features that operate on a
ObjectCollection
.Features that operate on a pair of
ObjectMask
s.Features that operate on a single
ObjectMask
.Features that convert to/from physical spatial units (e.g. meters) as opposed to pixels/voxels.
Implementations of
FeatureCalculatorMulti
related to images, especially to create tables of feature-calculations.A particular implementation of
FeatureCalculatorMulti
for feature-calculations based
upon pairs of image-objects.Image-related implementations of
FeatureInput
.Implementations and helper classes for calculating energy during an energy-minimization
optimization scheme.
Features calculated on a
Mark
.Non-bean classes pertaining to calculating energy of {org.anchoranalysis.mpp.mark.Mark}s.
Saved snapshots of energy-calculations.
Factorized form of storing the energy during an energy-minimization optimization scheme.
Non-bean classes for calculating feature-values related to
Mark
s.Features that are calculated from
Dimensions
.Implementations of
FeatureHistogram
that calculate
statistics.Implementations of
FeatureHistogram
that perform
thresholding.Implementations of
FeatureImageMetadata
.Implementations of
FeatureObjectCollection
.Features from pairs of
ObjectMask
s.Features that calculate the degree of overlap between two
ObjectMask
s.Features that calculate how many other objects an
ObjectMask
directly neighbors.Implementations of
FeatureSingleObject
.Implementations of
FeatureSingleObject
that determine if an
object lies at the border of an image.Implementations of
FeatureSingleObject
that consider an
object's bounding-box.Implementations of
FeatureSingleObject
that reference a
particular Channel
in the associated EnergyStack
.Implementations of
FeatureSingleObject
that measure an object's
intensity on a corresponding Channel
.Implementations of
FeatureSingleObject
that measure an object's
gradient from corresponding Channel
s storing the
gradient.Implementations of
FeatureSingleObject
based on calculating image moments, with or without image
intensity.Implementations of
FeatureSingleObject
that implement
morphological operations.Implementations of
FeatureSingleObject
that measure the shape
of the ObjectMask
.Implementations of
FeatureSingleObject
that use SharedObjects
for calculations.Implementations of
FeatureSingleObject
that use SharedObjects
for calculations, and measure
the degree of intersection between objects.Implementations of
FeatureSingleObject
that processes an object
slice-by-slice in the z-dimension.Implementations of
FeatureSingleObject
that measures aspects of
the surface of an ObjectMask
.Beans involving physical units for measurement.
Implementations of
VoxelScore
.Beans involving
SharedObjects
.Beans involving
SharedObjects
and
ObjectCollection
.Implementations of
FeatureStack
or other features
that involve processing a Stack
.Implementations of
FeatureStack
that process an
ObjectCollection
.Implementations of
CalculationPart
as used by
features elsewhere in this package.Implementations of
CalculationPart
that that
process a single ObjectMask
.Implementations of
CalculationPart
that process
Stack
s as used by features elsewhere in this package.Non-bean for operations or calculations relating to intensity.
Merging
ObjectMask
s.Source of rows in feature-tables with
FeatureSource
and derived classes.Extracting features using OpenCV.
Features that combine or convert other features in a generic way.
Arithmetic involving features.
Conditional operations involving features.
Operations that extract a single value from a list of features.
Features that compare against a range of values.
Converts feature values based upon a statistical measure of distribution.
Converting to/from physical units.
Non-bean statistical operations.
Features related to points and fitting points to conics.
CalculationPart
related to fitting
ellipses to points by least-squares.CalculationPart
related to fitting
ellipsoids to points by least-squares.Testing utilities and fixtures with no greater downstream dependency than
anchor-image-feature or anchor-mpp.
A mocked feature internally using a feature-calculation.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.annotation.io.assignmentClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.beanClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.bean.operatorClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.bean.resultsClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.calculateClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache.An exception that occurs when a feature fails to successfully calculate. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.calculate.boundClassDescriptionWhen the calculation of a feature cannot complete successfully.An exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.calculate.cacheClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache.CalculatesFeatureCalculationInput
when passed a particularFeature
and correspondingFeatureCalculationInput
. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.calculate.cache.partClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.calculate.partClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.inputClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.sessionClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache.An exception that occurs when a feature fails to successfully calculate. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.session.cache.finderClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.feature.session.replaceClassDescriptionGives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.beanClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.bean.histogramClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.bean.object.collectionClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.bean.object.pairClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.bean.object.singleClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.bean.physicalClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.calculatorClassDescriptionAn exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.calculator.mergedClassDescriptionAn exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.image.feature.inputClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.mpp.feature.bean.energy.elementClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.mpp.feature.bean.markClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.mpp.feature.energy.marksClassDescriptionAn exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.mpp.feature.energy.savedClassDescriptionAn exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.mpp.feature.energy.schemeClassDescriptionAn exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.mpp.feature.markClassDescriptionAn exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.dimensionsClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.histogram.statisticClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.histogram.thresholdClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.metadataClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.collectionClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.pairClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.pair.overlapClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.pair.touchingClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.singleClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.borderClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.boundingboxClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.energyClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.intensityClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradientClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.momentsClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.morphologicalClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.shapeClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.sliceClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.object.single.surfaceClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.physicalClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.scoreClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.stack.intensityClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.bean.stack.objectClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.object.calculation.delegateClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.object.calculation.singleClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.feature.stack.calculationClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.intensityClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.object.mergeClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.image.task.bean.feature.sourceClassDescriptionAn exception that occurs when a feature fails to successfully calculate.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.opencv.bean.featureClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.beanClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.bean.arithmeticClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.bean.conditionalClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.bean.listClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.bean.rangeClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.bean.statisticsClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.physicalClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.operator.feature.statisticsClassDescriptionWhen the calculation of a feature cannot complete successfully.
-
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.points.bean.featureClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.points.calculate.ellipseClassDescriptionWhen the calculation of a feature cannot complete successfully.
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Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.plugin.points.calculate.ellipsoidClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache. -
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.test.feature.pluginsClassDescriptionWhen the calculation of a feature cannot complete successfully.
-
Classes in org.anchoranalysis.feature.calculate used by org.anchoranalysis.test.feature.plugins.mockfeatureClassDescriptionWhen the calculation of a feature cannot complete successfully.Gives a
FeatureInput
the necessary context for feature-calculation, including associating it with a cache.