Uses of Enum Class
org.anchoranalysis.image.core.dimensions.OrientationChange

Packages that use OrientationChange

Package	Description
org.anchoranalysis.image.core.dimensions	Classes to describe the size of images or components of images both in voxels and physically.
org.anchoranalysis.image.io.stack	Non-bean classes for reading / writing a Stack from and to the filesystem.
org.anchoranalysis.io.bioformats.copyconvert	Converts the byte stream opened by Bioformats into channels of particular data-type.
org.anchoranalysis.io.bioformats.copyconvert.tobyte	Converts the byte stream opened by Bioformats into channels of ByteBuffer.
org.anchoranalysis.io.bioformats.copyconvert.tofloat	Converts the byte stream opened by Bioformats into channels of FloatBuffer.
org.anchoranalysis.io.bioformats.copyconvert.toint	Converts the byte stream opened by Bioformats into channels of IntBuffer.
org.anchoranalysis.io.bioformats.copyconvert.toshort	Converts the byte stream opened by Bioformats into channels of ShortBuffer.
org.anchoranalysis.io.bioformats.metadata	Reading metadata information from files using EXIF and/or other metadata headers.

Uses of OrientationChange in org.anchoranalysis.image.core.dimensions

Methods in org.anchoranalysis.image.core.dimensions that return OrientationChange

Modifier and Type	Method	Description
static OrientationChange	OrientationChange.valueOf(String name)	Returns the enum constant of this class with the specified name.
static OrientationChange[]	OrientationChange.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Uses of OrientationChange in org.anchoranalysis.image.io.stack

Methods in org.anchoranalysis.image.io.stack that return OrientationChange

Modifier and Type	Method	Description
OrientationChange	CalculateOrientationChange.calculateOrientationChange(Logger logger)	Calculates any needed orientation change.

Uses of OrientationChange in org.anchoranalysis.io.bioformats.copyconvert

Methods in org.anchoranalysis.io.bioformats.copyconvert with parameters of type OrientationChange

Modifier and Type	Method	Description
protected T	ConvertTo.convert(ByteBuffer source, int channelIndexRelative, OrientationChange orientationCorrection, boolean littleEndian)	Converts a slice of single-channel into a newly created buffer of type T T.
protected VoxelBuffer<T>	ConvertTo.convertSliceOfSingleChannel(ByteBuffer source, int channelIndexRelative, OrientationChange orientationCorrection)	Converts a slice of single-channel into a newly created VoxelBuffer.
void	ConvertTo.copyAllChannels(Dimensions dimensions, ByteBuffer source, DestinationChannelForIndex destination, int z, ImageFileEncoding sourceImageEncoding, OrientationChange orientationCorrection)	Copies the channels in the source buffer into a particular DestinationChannelForIndex.
static void	CopyConvert.copyAllFrames(loci.formats.IFormatReader reader, List<Channel> destination, ImageFileShape targetShape, ConvertTo<?> convertTo, ReadOptions readOptions, OrientationChange orientationCorrection)	Copies all frames, channels, z-slices (in a byte-array) into a destination set of Channels converting them if necessary along the way.
protected abstract void	ConvertTo.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, T destination, OrientationChange orientationCorrection)	Copy the bytes, changing orientation.

Uses of OrientationChange in org.anchoranalysis.io.bioformats.copyconvert.tobyte

Methods in org.anchoranalysis.io.bioformats.copyconvert.tobyte with parameters of type OrientationChange

Modifier and Type	Method	Description
protected UnsignedByteBuffer	UnsignedByteFromUnsignedByte.convert(ByteBuffer source, int channelIndexRelative, OrientationChange orientationCorrection, boolean littleEndian)
protected void	ToUnsignedByteWithScaling.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedByteBuffer destination, OrientationChange orientationCorrection)
protected void	UnsignedByteFromFloat.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedByteBuffer destination, OrientationChange orientationCorrection)
protected void	UnsignedByteFromUnsignedByteInterleaving.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedByteBuffer destination, OrientationChange orientationCorrection)
protected void	UnsignedByteFromUnsignedByteNoInterleaving.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedByteBuffer destination, OrientationChange orientationCorrection)

Uses of OrientationChange in org.anchoranalysis.io.bioformats.copyconvert.tofloat

Methods in org.anchoranalysis.io.bioformats.copyconvert.tofloat with parameters of type OrientationChange

Modifier and Type	Method	Description
protected void	FloatFromUnsignedByte.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, FloatBuffer destination, OrientationChange orientationCorrection)
protected void	FloatFromUnsignedInt.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, FloatBuffer destination, OrientationChange orientationCorrection)

Uses of OrientationChange in org.anchoranalysis.io.bioformats.copyconvert.toint

Methods in org.anchoranalysis.io.bioformats.copyconvert.toint with parameters of type OrientationChange

Modifier and Type	Method	Description
protected void	UnsignedIntFromUnsignedInt.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedIntBuffer destination, OrientationChange orientationCorrection)

Uses of OrientationChange in org.anchoranalysis.io.bioformats.copyconvert.toshort

Methods in org.anchoranalysis.io.bioformats.copyconvert.toshort with parameters of type OrientationChange

Modifier and Type	Method	Description
protected void	ToUnsignedShort.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedShortBuffer destination, OrientationChange orientationCorrection)

Uses of OrientationChange in org.anchoranalysis.io.bioformats.metadata

Methods in org.anchoranalysis.io.bioformats.metadata that return types with arguments of type OrientationChange

Modifier and Type	Method	Description
static Optional<OrientationChange>	OrientationReader.determineOrientationCorrection(com.drew.metadata.Metadata metadata)	Determines the needed correction to orientation for the voxels if an EXIF orientation tag is present.
static Optional<OrientationChange>	OrientationReader.determineOrientationCorrection(Path path)	Determines the needed correction to orientation for the voxels if an EXIF orientation tag is present.