Uses of Class
org.anchoranalysis.image.core.dimensions.Resolution

Packages that use Resolution

Package	Description
org.anchoranalysis.feature.energy	A particular stack used in feature-calculations called a EnergyStack together with related classes.
org.anchoranalysis.feature.input	Base classes providing inputs to feature calculations.
org.anchoranalysis.image.bean.nonbean.segment	Non-bean classes relating to image-segmentation.
org.anchoranalysis.image.core.channel	The Channel core data-class and related operations and converters.
org.anchoranalysis.image.core.channel.factory	Factory classes for creating Channel for various voxel data-types.
org.anchoranalysis.image.core.dimensions	Classes to describe the size of images or components of images both in voxels and physically.
org.anchoranalysis.image.core.mask	An image with only two permissible states.
org.anchoranalysis.image.core.stack	Defines the key data object, Stack, and related classes.
org.anchoranalysis.image.feature.bean.physical	Features that convert to/from physical spatial units (e.g. meters) as opposed to pixels/voxels.
org.anchoranalysis.image.feature.input	Image-related implementations of FeatureInput.
org.anchoranalysis.image.io.object.output.mask	Writing an ObjectCollection to the filesystem as multiple binary singled-channeled images.
org.anchoranalysis.io.imagej.convert	Converts to and from ImageJ data-structures for images.
org.anchoranalysis.mpp.bean.bound	Lower and upper limits set around variables.
org.anchoranalysis.mpp.bean.bound.rotation	Bounds on how to rotate an entity in Euclidean space.
org.anchoranalysis.mpp.bean.proposer	Proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.mpp.feature.bean.mark	Features calculated on a Mark.
org.anchoranalysis.mpp.feature.bean.mark.collection	Features calculated on a org.anchoranalysis.mpp.feature.bean.mark.collection.
org.anchoranalysis.mpp.mark.conic	Marks implementing conic sections.
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance	Euclidean Distance Transform implementations via FIJI.
org.anchoranalysis.plugin.image.bean.object.provider.merge	Implementations of ObjectCollectionProvider involving merging objects together.
org.anchoranalysis.plugin.image.feature.bean.physical	Beans involving physical units for measurement.
org.anchoranalysis.plugin.io.bean.stack.reader	Implementations of StackReader.
org.anchoranalysis.plugin.io.xml	Reading and writing metadata XML.
org.anchoranalysis.test.image	Testing utilities and fixtures with no greater downstream dependency than anchor-image-io or anchor-io-bioformats or anchor-imagej.

Uses of Resolution in org.anchoranalysis.feature.energy

Methods in org.anchoranalysis.feature.energy that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	EnergyStack.resolution()	The image-resolution associated with the energy-stack.

Uses of Resolution in org.anchoranalysis.feature.input

Methods in org.anchoranalysis.feature.input that return Resolution

Modifier and Type	Method	Description
default Resolution	FeatureInputWithResolution.getResolutionRequired()	The resolution of the associated image, or an exception if it is not available.

Methods in org.anchoranalysis.feature.input that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	FeatureInputDimensions.getResolutionOptional()
Optional<Resolution>	FeatureInputEnergy.getResolutionOptional()
Optional<Resolution>	FeatureInputWithResolution.getResolutionOptional()	The resolution of the associated image, if it is available.

Uses of Resolution in org.anchoranalysis.image.bean.nonbean.segment

Methods in org.anchoranalysis.image.bean.nonbean.segment that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	BinarySegmentationParameters.getResolution()	A Resolution associated with the image being segmented.

Constructors in org.anchoranalysis.image.bean.nonbean.segment with parameters of type Resolution

Modifier	Constructor	Description
	BinarySegmentationParameters(Resolution resolution, Optional<Histogram> intensityHistogram)	Creates with a specific resolution and intensity-histogram.

Constructor parameters in org.anchoranalysis.image.bean.nonbean.segment with type arguments of type Resolution

Modifier	Constructor	Description
	BinarySegmentationParameters(Optional<Resolution> resolution)	Creates with a specific resolution, but no intensity-histogram.

Uses of Resolution in org.anchoranalysis.image.core.channel

Methods in org.anchoranalysis.image.core.channel that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	Channel.resolution()	The resolution of the voxel that describes a physical size for each voxel.

Method parameters in org.anchoranalysis.image.core.channel with type arguments of type Resolution

Modifier and Type	Method	Description
void	Channel.assignResolution(Optional<Resolution> resolution)	Assigns a new resolution.

Constructor parameters in org.anchoranalysis.image.core.channel with type arguments of type Resolution

Modifier	Constructor	Description
	Channel(Voxels<?> voxels, Optional<Resolution> resolution)	Creates for particular voxels and resolution.

Uses of Resolution in org.anchoranalysis.image.core.channel.factory

Method parameters in org.anchoranalysis.image.core.channel.factory with type arguments of type Resolution

Modifier and Type	Method	Description
Channel	ChannelFactory.create(Voxels<?> voxels, Optional<Resolution> resolution)	Create a Channel from particular voxels.
Channel	ChannelFactorySingleType.create(Voxels<?> voxels, Optional<Resolution> resolution)	Create a Channel from voxels and a resolution.

Uses of Resolution in org.anchoranalysis.image.core.dimensions

Methods in org.anchoranalysis.image.core.dimensions that return Resolution

Modifier and Type	Method	Description
static Resolution	Resolution.createWithXY(double xy)	Creates with only XY resolution, identical in both dimensions.
static Resolution	Resolution.createWithXYAndZ(double xy, double z)	Creates with XY resolution and Z resolution.
abstract Resolution	OrientationChange.resolution(Resolution resolution)	A Resolution that describes resolution after the orientation change.
Resolution	Resolution.scaleXY(ScaleFactor scaleFactor)	Multiplies the X and Y components of the resolution by a factor.

Methods in org.anchoranalysis.image.core.dimensions that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	Dimensions.resolution()	Resolution of voxels to physical measurements.

Methods in org.anchoranalysis.image.core.dimensions with parameters of type Resolution

Modifier and Type	Method	Description
abstract Resolution	OrientationChange.resolution(Resolution resolution)	A Resolution that describes resolution after the orientation change.

Method parameters in org.anchoranalysis.image.core.dimensions with type arguments of type Resolution

Modifier and Type	Method	Description
Dimensions	Dimensions.duplicateChangeResolution(Optional<Resolution> resolutionToAssign)	Deep-copies the current object, but assigns a different Resolution.

Constructors in org.anchoranalysis.image.core.dimensions with parameters of type Resolution

Modifier	Constructor	Description
	UnitConverter(Resolution resolution)	Creates a new UnitConverter instance.

Constructor parameters in org.anchoranalysis.image.core.dimensions with type arguments of type Resolution

Modifier	Constructor	Description
	Dimensions(Extent extent, Optional<Resolution> resolution)	Creates a new Dimensions instance.

Uses of Resolution in org.anchoranalysis.image.core.mask

Methods in org.anchoranalysis.image.core.mask that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	Mask.resolution()	Resolution of voxels to physical measurements.

Constructor parameters in org.anchoranalysis.image.core.mask with type arguments of type Resolution

Modifier	Constructor	Description
	Mask(BinaryVoxels<UnsignedByteBuffer> voxels, Optional<Resolution> resolution)	Creates a mask from an existing binary-voxels and a specific image resolution.

Uses of Resolution in org.anchoranalysis.image.core.stack

Methods in org.anchoranalysis.image.core.stack that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	DisplayStack.resolution()	Resolution of voxels to physical measurements.
Optional<Resolution>	Stack.resolution()	Resolution of voxels to physical measurements.

Methods in org.anchoranalysis.image.core.stack with parameters of type Resolution

Modifier and Type	Method	Description
void	Stack.assignResolution(Resolution resolution)	Assigns a new resolution.

Uses of Resolution in org.anchoranalysis.image.feature.bean.physical

Methods in org.anchoranalysis.image.feature.bean.physical with parameters of type Resolution

Modifier and Type	Method	Description
protected double	FeatureConvertUnits.calculateWithResolution(double value, Resolution resolution)	Calculates the feature value with resolution information.
protected abstract double	WithResolutionBase.calculateWithResolution(double value, Resolution resolution)	Calculates the feature value using the provided value and resolution.

Uses of Resolution in org.anchoranalysis.image.feature.input

Methods in org.anchoranalysis.image.feature.input that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	FeatureInputHistogram.getResolutionOptional()	Gets the optional resolution information.

Constructor parameters in org.anchoranalysis.image.feature.input with type arguments of type Resolution

Modifier	Constructor	Description
	FeatureInputHistogram(Histogram histogram, Optional<Resolution> resolution)	Creates a new FeatureInputHistogram instance.

Uses of Resolution in org.anchoranalysis.image.io.object.output.mask

Constructor parameters in org.anchoranalysis.image.io.object.output.mask with type arguments of type Resolution

Modifier	Constructor	Description
	ObjectAsMaskGenerator(Optional<Resolution> resolution)
	ObjectWithBoundingBoxGenerator(Optional<Resolution> resolution)	Create with a resolution, if it is known.

Uses of Resolution in org.anchoranalysis.io.imagej.convert

Method parameters in org.anchoranalysis.io.imagej.convert with type arguments of type Resolution

Modifier and Type	Method	Description
static Channel	ConvertFromImagePlus.toChannel(ij.ImagePlus imagePlus, Optional<Resolution> resolution)	Converts an ImagePlus to a Channel.

Uses of Resolution in org.anchoranalysis.mpp.bean.bound

Method parameters in org.anchoranalysis.mpp.bean.bound with type arguments of type Resolution

Modifier and Type	Method	Description
ResolvedBound	MarkBounds.calculateMinMax(Optional<Resolution> resolution, boolean do3D)	Calculates the resolved minimum and maximum values as a ResolvedBound.
double	BoundDegrees.getMaxResolved(Optional<Resolution> resolution, boolean do3D)
double	BoundPhysicalExtent.getMaxResolved(Optional<Resolution> resolution, boolean do3D)
double	BoundUnitless.getMaxResolved(Optional<Resolution> resolution, boolean do3D)
abstract double	MarkBounds.getMaxResolved(Optional<Resolution> resolution, boolean do3D)	Gets the resolved maximum value of the bound, considering resolution and dimensionality.
double	BoundDegrees.getMinResolved(Optional<Resolution> resolution, boolean do3D)
double	BoundPhysicalExtent.getMinResolved(Optional<Resolution> resolution, boolean do3D)
double	BoundUnitless.getMinResolved(Optional<Resolution> resolution, boolean do3D)
abstract double	MarkBounds.getMinResolved(Optional<Resolution> resolution, boolean do3D)	Gets the resolved minimum value of the bound, considering resolution and dimensionality.
ResolvedBound	Bound.resolve(Optional<Resolution> resolution, boolean do3D)	Resolves the bound based on the given resolution and dimensionality.

Uses of Resolution in org.anchoranalysis.mpp.bean.bound.rotation

Method parameters in org.anchoranalysis.mpp.bean.bound.rotation with type arguments of type Resolution

Modifier and Type	Method	Description
abstract Orientation	BoundRotation.randomOrientation(RandomNumberGenerator randomNumberGenerator, Optional<Resolution> resolution)	Generates a random orientation within the defined bounds.
Orientation	BoundRotation2D.randomOrientation(RandomNumberGenerator randomNumberGenerator, Optional<Resolution> resolution)
Orientation	BoundRotation3D.randomOrientation(RandomNumberGenerator randomNumberGenerator, Optional<Resolution> resolution)

Uses of Resolution in org.anchoranalysis.mpp.bean.proposer

Method parameters in org.anchoranalysis.mpp.bean.proposer with type arguments of type Resolution

Modifier and Type	Method	Description
abstract double	ScalarProposer.propose(RandomNumberGenerator randomNumberGenerator, Optional<Resolution> resolution)	Proposes a scalar value based on the given parameters.

Uses of Resolution in org.anchoranalysis.mpp.feature.bean.mark

Methods in org.anchoranalysis.mpp.feature.bean.mark that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	FeatureInputMark.getResolutionOptional()

Uses of Resolution in org.anchoranalysis.mpp.feature.bean.mark.collection

Methods in org.anchoranalysis.mpp.feature.bean.mark.collection that return types with arguments of type Resolution

Modifier and Type	Method	Description
Optional<Resolution>	FeatureInputMarkCollection.getResolutionOptional()

Uses of Resolution in org.anchoranalysis.mpp.mark.conic

Method parameters in org.anchoranalysis.mpp.mark.conic with type arguments of type Resolution

Modifier and Type	Method	Description
abstract double[]	ConicBase.createRadiiArrayResolved(Optional<Resolution> resolution)	Creates an array of radii resolved to the given resolution.
double[]	Ellipse.createRadiiArrayResolved(Optional<Resolution> resolution)
double[]	Ellipsoid.createRadiiArrayResolved(Optional<Resolution> resolution)
static double[]	EllipsoidUtilities.normalisedRadii(Ellipsoid mark, Optional<Resolution> resolution)	Calculates the normalized radii of an Ellipsoid mark, taking into account rotation and optional resolution.
double[]	ConicBase.radiiOrderedResolved(Optional<Resolution> resolution)	Returns an ordered array of radii resolved to the given resolution.
static Point3d	RadiiRandomizer.randomizeRadii(Bound bound, RandomNumberGenerator randomNumberGenerator, Optional<Resolution> resolution, boolean do3D)	Generates random radii for a conic shape.

Uses of Resolution in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance

Method parameters in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance with type arguments of type Resolution

Modifier and Type	Method	Description
Voxels<UnsignedByteBuffer>	DistanceTransform3D.createDistanceMapForVoxels(BinaryVoxels<UnsignedByteBuffer> voxels, Optional<Resolution> resolution, float multiplyByZRes)	Creates a distance map for binary voxels.

Uses of Resolution in org.anchoranalysis.plugin.image.bean.object.provider.merge

Methods in org.anchoranalysis.plugin.image.bean.object.provider.merge that return Resolution

Modifier and Type	Method	Description
protected Resolution	MergeBase.resolutionRequired()	Gets the required Resolution.

Uses of Resolution in org.anchoranalysis.plugin.image.feature.bean.physical

Methods in org.anchoranalysis.plugin.image.feature.bean.physical with parameters of type Resolution

Modifier and Type	Method	Description
protected double	UnitsWithinRange.calculateWithResolution(double value, Resolution resolution)

Uses of Resolution in org.anchoranalysis.plugin.io.bean.stack.reader

Methods in org.anchoranalysis.plugin.io.bean.stack.reader that return types with arguments of type Resolution

Modifier and Type	Method	Description
static Optional<Resolution>	ReadVoxelExtentXml.readMetadata(Path filePath, boolean acceptNoResolution)	Looks for a metadata file describing the resolution

Uses of Resolution in org.anchoranalysis.plugin.io.xml

Methods in org.anchoranalysis.plugin.io.xml that return Resolution

Modifier and Type	Method	Description
static Resolution	ResolutionAsXML.readResolutionXml(File file)	Retrieves resolution from a XML file previously written by ResolutionAsXML.writeResolutionXML(Resolution, Path).

Methods in org.anchoranalysis.plugin.io.xml with parameters of type Resolution

Modifier and Type	Method	Description
static void	ResolutionAsXML.writeResolutionXML(Resolution resolution, Path path)	Writes a XML metadata file describing the image-resolution.

Uses of Resolution in org.anchoranalysis.test.image

Fields in org.anchoranalysis.test.image declared as Resolution

Modifier and Type	Field	Description
static final Resolution	ResolutionFixture.INSTANCE	A pre-created Resolution instance for use in tests.

Method parameters in org.anchoranalysis.test.image with type arguments of type Resolution

Modifier and Type	Method	Description
static Mask	MaskFixture.create(boolean do3D, Optional<Resolution> resolution)	Creates the Mask with the default corner and a particular resolution.
static Mask	MaskFixture.create(Point3i corner, boolean do3D, Optional<Resolution> resolution)	Creates the Mask with a particular corner and a particular resolution.