Uses of Class
org.anchoranalysis.image.core.stack.RGBStack

Packages that use RGBStack

Package	Description
org.anchoranalysis.image.bean.displayer
org.anchoranalysis.image.bean.spatial.arrange	Beans to specify how to form a single-image by spatially combining other images.
org.anchoranalysis.image.core.stack	Defines the key data object, Stack, and related classes.
org.anchoranalysis.image.io.bean.object.draw	How to represent an object-mask in a raster that is being drawn.
org.anchoranalysis.image.io.object.output.rgb	Writing an ObjectCollection to the filesystem as RGB raster-images.
org.anchoranalysis.image.io.stack	Non-bean classes for reading / writing a Stack from and to the filesystem.
org.anchoranalysis.overlay.bean	Beans relating to drawing an Overlay on an image.
org.anchoranalysis.overlay.writer	Drawing an overlay on an image.
org.anchoranalysis.plugin.image.task.slice	Non-bean classes pertaining to combining stacks into a single stack.

Uses of RGBStack in org.anchoranalysis.image.bean.displayer

Methods in org.anchoranalysis.image.bean.displayer with parameters of type RGBStack

Modifier and Type	Method	Description
DisplayStack	StackDisplayer.deriveFrom(RGBStack rgbStack)	Derives a DisplayStack from a RGBStack.

Uses of RGBStack in org.anchoranalysis.image.bean.spatial.arrange

Methods in org.anchoranalysis.image.bean.spatial.arrange that return RGBStack

Modifier and Type	Method	Description
RGBStack	StackArranger.combine(List<RGBStack> stacks, VoxelsResizer resizer, OperationContext context)	Creates a new RGBStack of voxel data type unsigned byte that is a combination of other RGBStacks.
RGBStack	StackArranger.combine(List<RGBStack> stacks, VoxelsResizer resizer, ChannelFactorySingleType factory, OperationContext context)	Creates a new RGBStack that is a combination of other RGBStacks.

Method parameters in org.anchoranalysis.image.bean.spatial.arrange with type arguments of type RGBStack

Modifier and Type	Method	Description
RGBStack	StackArranger.combine(List<RGBStack> stacks, VoxelsResizer resizer, OperationContext context)	Creates a new RGBStack of voxel data type unsigned byte that is a combination of other RGBStacks.
RGBStack	StackArranger.combine(List<RGBStack> stacks, VoxelsResizer resizer, ChannelFactorySingleType factory, OperationContext context)	Creates a new RGBStack that is a combination of other RGBStacks.

Uses of RGBStack in org.anchoranalysis.image.core.stack

Methods in org.anchoranalysis.image.core.stack that return RGBStack

Modifier and Type	Method	Description
RGBStack	RGBStack.duplicate()	A deep copy.
RGBStack	RGBStack.extractSlice(int z)	Extract a particular z-slice from the Stack as a new stack.
RGBStack	RGBStack.mapChannel(CheckedUnaryOperator<Channel,OperationFailedException> mapping)	Produces a new stack with a particular mapping applied to each channel.

Uses of RGBStack in org.anchoranalysis.image.io.bean.object.draw

Methods in org.anchoranalysis.image.io.bean.object.draw with parameters of type RGBStack

Modifier and Type	Method	Description
void	Filled.drawSingle(ObjectWithProperties object, RGBStack stack, ObjectDrawAttributes attributes, int iteration, BoundingBox restrictTo)
void	Flatten.drawSingle(ObjectWithProperties object, RGBStack stack, ObjectDrawAttributes attributes, int iteration, BoundingBox restrictTo)
void	IfElse.drawSingle(ObjectWithProperties object, RGBStack stack, ObjectDrawAttributes attributes, int iteration, BoundingBox restrictTo)
void	Outline.drawSingle(ObjectWithProperties object, RGBStack stack, ObjectDrawAttributes attributes, int iteration, BoundingBox restrictTo)
boolean	IfElse.Predicate.test(ObjectWithProperties object, RGBStack stack, int identifier)	Evaluates whether the condition is true or not.

Uses of RGBStack in org.anchoranalysis.image.io.object.output.rgb

Methods in org.anchoranalysis.image.io.object.output.rgb that return RGBStack

Modifier and Type	Method	Description
protected static RGBStack	ObjectsAsRGBGenerator.createEmptyStackFor(Dimensions dimensions)	Creates an empty RGBStack.
protected RGBStack	DrawCroppedObjectsGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)
protected RGBStack	DrawObjectsGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)
protected abstract RGBStack	ObjectsAsRGBGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a RGBStack containing the background, without objects being drawn upon it.

Uses of RGBStack in org.anchoranalysis.image.io.stack

Methods in org.anchoranalysis.image.io.stack that return RGBStack

Modifier and Type	Method	Description
static RGBStack	ConvertStackToRGB.convert(DisplayStack stack, boolean alwaysNew)	Converts all of a DisplayStack to a RGBStack.
static RGBStack	ConvertStackToRGB.convert(Stack stack, StackDisplayer displayer, boolean alwaysNew)	Converts all of a DisplayStack to a RGBStack.
static RGBStack	ConvertStackToRGB.convertCropped(DisplayStack stack, BoundingBox box)	Converts a bounding-box region in DisplayStack to a RGBStack.

Uses of RGBStack in org.anchoranalysis.overlay.bean

Methods in org.anchoranalysis.overlay.bean with parameters of type RGBStack

Modifier and Type	Method	Description
void	DrawObject.drawCollection(ObjectCollectionWithProperties objects, RGBStack stack, ObjectDrawAttributes attributes)	Writes object-masks onto of a RGBStack - across all of the stack.
void	DrawObject.drawCollection(ObjectCollectionWithProperties objects, RGBStack stack, ObjectDrawAttributes attributes, BoundingBox boxContainer)	Writes object-masks onto of a RGBStack - within a bounding box only.
abstract void	DrawObject.drawSingle(ObjectWithProperties object, RGBStack stack, ObjectDrawAttributes attributes, int iteration, BoundingBox restrictTo)	Draws a single-object on top of a RGB-stack.

Uses of RGBStack in org.anchoranalysis.overlay.writer

Methods in org.anchoranalysis.overlay.writer with parameters of type RGBStack

Modifier and Type	Method	Description
void	DrawOverlay.drawOverlays(ColoredOverlayCollection overlays, RGBStack stack, IdentifierGetter<Overlay> idGetter)	Draw a collection of colored-overlays on top of a RGBStack.

Uses of RGBStack in org.anchoranalysis.plugin.image.task.slice

Methods in org.anchoranalysis.plugin.image.task.slice that return RGBStack

Modifier and Type	Method	Description
RGBStack	MontageSharedState.getStack()	The stack into which individual images are written.

Method parameters in org.anchoranalysis.plugin.image.task.slice with type arguments of type RGBStack

Modifier and Type	Method	Description
void	MontageSharedState.copyStackInto(CheckedSupplier<RGBStack,InputReadFailedException> source, String identifier, Path path, Optional<String> label)	Copies a Stack into a BoundingBox in the combined image, resizing if necessary.